Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_362

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_359 and PfGW456L13_360 are separated by 42 nucleotidesPfGW456L13_360 and PfGW456L13_361 are separated by 0 nucleotidesPfGW456L13_361 and PfGW456L13_362 overlap by 1 nucleotidesPfGW456L13_362 and PfGW456L13_363 are separated by 268 nucleotides PfGW456L13_359 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 419,401 to 420,138 _359 PfGW456L13_360 - FIG00956267: hypothetical protein, at 420,181 to 420,438 _360 PfGW456L13_361 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 420,439 to 421,077 _361 PfGW456L13_362 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 421,077 to 421,670 _362 PfGW456L13_363 - MFS permease, at 421,939 to 423,603 _363 Position (kb) 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 420.111 kb on + strandat 420.112 kb on - strandat 420.129 kb on + strandat 420.130 kb on - strandat 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.270 kb on - strand, within PfGW456L13_360at 420.270 kb on - strand, within PfGW456L13_360at 420.272 kb on + strand, within PfGW456L13_360at 420.273 kb on - strand, within PfGW456L13_360at 420.440 kb on + strandat 420.441 kb on - strandat 420.493 kb on - strandat 420.566 kb on + strand, within PfGW456L13_361at 420.567 kb on - strand, within PfGW456L13_361at 420.567 kb on - strand, within PfGW456L13_361at 420.567 kb on - strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 421.078 kb on + strandat 421.303 kb on + strand, within PfGW456L13_362at 421.303 kb on + strand, within PfGW456L13_362at 421.303 kb on + strand, within PfGW456L13_362at 421.304 kb on - strand, within PfGW456L13_362at 421.381 kb on + strand, within PfGW456L13_362at 421.381 kb on + strand, within PfGW456L13_362at 421.381 kb on + strand, within PfGW456L13_362at 421.382 kb on - strand, within PfGW456L13_362at 421.382 kb on - strand, within PfGW456L13_362at 421.382 kb on - strand, within PfGW456L13_362at 421.452 kb on - strand, within PfGW456L13_362at 421.484 kb on + strand, within PfGW456L13_362at 421.485 kb on - strand, within PfGW456L13_362at 421.485 kb on - strand, within PfGW456L13_362at 421.508 kb on + strand, within PfGW456L13_362at 421.508 kb on + strand, within PfGW456L13_362at 421.658 kb on + strandat 421.659 kb on - strandat 421.659 kb on - strandat 421.659 kb on - strandat 421.659 kb on - strandat 421.659 kb on - strandat 421.712 kb on - strandat 421.713 kb on + strandat 421.713 kb on + strandat 421.714 kb on - strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.787 kb on + strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.788 kb on - strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.797 kb on + strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.798 kb on - strandat 421.940 kb on + strandat 421.941 kb on - strandat 422.135 kb on + strand, within PfGW456L13_363at 422.135 kb on + strand, within PfGW456L13_363at 422.135 kb on + strandat 422.135 kb on + strand, within PfGW456L13_363at 422.135 kb on + strand, within PfGW456L13_363at 422.136 kb on - strand, within PfGW456L13_363at 422.136 kb on - strand, within PfGW456L13_363at 422.136 kb on - strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.204 kb on + strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.205 kb on - strand, within PfGW456L13_363at 422.219 kb on + strand, within PfGW456L13_363at 422.219 kb on + strand, within PfGW456L13_363at 422.219 kb on + strand, within PfGW456L13_363at 422.219 kb on + strand, within PfGW456L13_363at 422.220 kb on - strand, within PfGW456L13_363at 422.220 kb on - strand, within PfGW456L13_363at 422.220 kb on - strand, within PfGW456L13_363at 422.248 kb on + strand, within PfGW456L13_363at 422.248 kb on + strand, within PfGW456L13_363at 422.248 kb on + strand, within PfGW456L13_363at 422.248 kb on + strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.249 kb on - strand, within PfGW456L13_363at 422.255 kb on + strand, within PfGW456L13_363at 422.255 kb on + strand, within PfGW456L13_363at 422.267 kb on + strand, within PfGW456L13_363at 422.267 kb on + strand, within PfGW456L13_363at 422.267 kb on + strand, within PfGW456L13_363at 422.267 kb on + strand, within PfGW456L13_363at 422.267 kb on + strand, within PfGW456L13_363at 422.267 kb on + strand, within PfGW456L13_363at 422.268 kb on - strand, within PfGW456L13_363at 422.268 kb on - strand, within PfGW456L13_363at 422.268 kb on - strand, within PfGW456L13_363at 422.268 kb on - strand, within PfGW456L13_363at 422.268 kb on - strand, within PfGW456L13_363at 422.268 kb on - strand, within PfGW456L13_363at 422.349 kb on + strand, within PfGW456L13_363at 422.399 kb on + strand, within PfGW456L13_363at 422.399 kb on + strand, within PfGW456L13_363at 422.399 kb on + strand, within PfGW456L13_363at 422.400 kb on - strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.510 kb on + strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.511 kb on - strand, within PfGW456L13_363at 422.531 kb on + strand, within PfGW456L13_363

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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420,111 + -1.1
420,112 - -4.6
420,129 + -0.9
420,130 - -4.6
420,269 + PfGW456L13_360 0.34 -2.9
420,269 + PfGW456L13_360 0.34 -3.3
420,269 + PfGW456L13_360 0.34 -3.5
420,269 + PfGW456L13_360 0.34 -3.8
420,269 + PfGW456L13_360 0.34 -2.5
420,270 - PfGW456L13_360 0.34 -2.1
420,270 - PfGW456L13_360 0.34 -1.2
420,272 + PfGW456L13_360 0.35 -2.8
420,273 - PfGW456L13_360 0.36 +1.6
420,440 + -3.3
420,441 - +1.2
420,493 - -2.7
420,566 + PfGW456L13_361 0.20 -3.3
420,567 - PfGW456L13_361 0.20 -4.6
420,567 - PfGW456L13_361 0.20 -1.6
420,567 - PfGW456L13_361 0.20 -2.9
420,611 + PfGW456L13_361 0.27 -3.5
420,611 + PfGW456L13_361 0.27 -2.8
420,611 + PfGW456L13_361 0.27 -3.2
420,611 + PfGW456L13_361 0.27 -3.6
420,611 + PfGW456L13_361 0.27 -2.8
420,611 + PfGW456L13_361 0.27 -3.7
420,611 + PfGW456L13_361 0.27 -1.7
420,612 - PfGW456L13_361 0.27 -2.8
420,612 - PfGW456L13_361 0.27 -2.3
420,612 - PfGW456L13_361 0.27 -3.4
420,612 - PfGW456L13_361 0.27 -4.0
420,612 - PfGW456L13_361 0.27 -4.0
420,612 - PfGW456L13_361 0.27 -3.5
420,612 - PfGW456L13_361 0.27 -2.4
420,612 - PfGW456L13_361 0.27 -4.4
420,612 - PfGW456L13_361 0.27 -3.7
420,612 - PfGW456L13_361 0.27 -3.8
420,612 - PfGW456L13_361 0.27 -3.8
420,612 - PfGW456L13_361 0.27 -2.7
420,612 - PfGW456L13_361 0.27 -4.2
420,614 + PfGW456L13_361 0.27 -3.4
420,614 + PfGW456L13_361 0.27 -4.2
420,614 + PfGW456L13_361 0.27 -3.4
420,614 + PfGW456L13_361 0.27 -2.3
420,614 + PfGW456L13_361 0.27 -3.9
420,614 + PfGW456L13_361 0.27 +0.3
420,614 + PfGW456L13_361 0.27 -3.9
420,614 + PfGW456L13_361 0.27 -1.5
420,615 - PfGW456L13_361 0.28 -2.7
420,615 - PfGW456L13_361 0.28 -2.4
420,615 - PfGW456L13_361 0.28 -4.4
420,615 - PfGW456L13_361 0.28 -2.4
420,615 - PfGW456L13_361 0.28 -3.1
420,615 - PfGW456L13_361 0.28 -3.8
420,615 - PfGW456L13_361 0.28 -3.3
421,078 + -2.7
421,303 + PfGW456L13_362 0.38 -2.0
421,303 + PfGW456L13_362 0.38 -3.9
421,303 + PfGW456L13_362 0.38 -3.4
421,304 - PfGW456L13_362 0.38 -3.0
421,381 + PfGW456L13_362 0.51 -3.7
421,381 + PfGW456L13_362 0.51 -3.6
421,381 + PfGW456L13_362 0.51 -3.6
421,382 - PfGW456L13_362 0.51 -3.8
421,382 - PfGW456L13_362 0.51 -2.9
421,382 - PfGW456L13_362 0.51 -3.6
421,452 - PfGW456L13_362 0.63 -0.9
421,484 + PfGW456L13_362 0.69 -3.7
421,485 - PfGW456L13_362 0.69 -4.5
421,485 - PfGW456L13_362 0.69 -3.7
421,508 + PfGW456L13_362 0.73 -4.2
421,508 + PfGW456L13_362 0.73 -3.5
421,658 + -2.8
421,659 - -2.5
421,659 - -0.9
421,659 - -3.5
421,659 - -3.2
421,659 - -3.0
421,712 - -2.9
421,713 + -3.3
421,713 + -3.4
421,714 - +2.4
421,787 + +1.0
421,787 + +2.1
421,787 + +0.3
421,787 + -2.0
421,787 + +3.2
421,787 + +0.4
421,787 + -1.3
421,787 + -2.6
421,787 + +1.9
421,787 + +2.2
421,787 + +1.5
421,787 + +1.5
421,787 + -1.2
421,787 + +0.9
421,787 + -3.3
421,787 + +1.5
421,787 + -3.5
421,787 + +2.4
421,787 + +1.6
421,787 + +0.6
421,787 + -0.6
421,787 + -1.9
421,787 + -0.1
421,788 - +2.7
421,788 - +1.0
421,788 - +0.0
421,788 - +1.4
421,788 - -0.1
421,788 - +1.2
421,788 - -1.5
421,788 - -1.5
421,788 - +0.4
421,788 - -0.3
421,788 - -0.7
421,788 - -1.1
421,788 - -1.8
421,788 - +2.5
421,788 - +1.5
421,788 - +1.4
421,788 - -0.1
421,788 - +1.0
421,788 - -1.3
421,797 + -4.1
421,797 + +2.4
421,797 + +1.7
421,797 + +0.8
421,797 + -3.1
421,797 + +2.1
421,797 + -1.0
421,797 + -1.9
421,797 + -0.2
421,798 - +2.0
421,798 - -0.0
421,798 - +0.2
421,798 - +0.9
421,798 - +1.1
421,798 - +1.0
421,798 - -2.1
421,798 - +1.6
421,940 + +0.5
421,941 - -2.0
422,135 + PfGW456L13_363 0.12 +2.8
422,135 + PfGW456L13_363 0.12 +2.5
422,135 + +0.9
422,135 + PfGW456L13_363 0.12 +0.7
422,135 + PfGW456L13_363 0.12 +1.7
422,136 - PfGW456L13_363 0.12 +0.2
422,136 - PfGW456L13_363 0.12 -0.3
422,136 - PfGW456L13_363 0.12 -0.0
422,204 + PfGW456L13_363 0.16 -0.6
422,204 + PfGW456L13_363 0.16 +0.7
422,204 + PfGW456L13_363 0.16 -1.7
422,204 + PfGW456L13_363 0.16 -3.0
422,204 + PfGW456L13_363 0.16 +2.9
422,204 + PfGW456L13_363 0.16 +1.1
422,204 + PfGW456L13_363 0.16 -2.7
422,204 + PfGW456L13_363 0.16 +1.3
422,205 - PfGW456L13_363 0.16 +1.5
422,205 - PfGW456L13_363 0.16 -1.2
422,205 - PfGW456L13_363 0.16 -1.2
422,205 - PfGW456L13_363 0.16 +3.3
422,205 - PfGW456L13_363 0.16 -1.5
422,205 - PfGW456L13_363 0.16 +0.4
422,205 - PfGW456L13_363 0.16 +0.8
422,219 + PfGW456L13_363 0.17 +0.3
422,219 + PfGW456L13_363 0.17 -0.7
422,219 + PfGW456L13_363 0.17 +1.3
422,219 + PfGW456L13_363 0.17 -0.0
422,220 - PfGW456L13_363 0.17 -0.2
422,220 - PfGW456L13_363 0.17 +0.0
422,220 - PfGW456L13_363 0.17 -3.1
422,248 + PfGW456L13_363 0.19 -2.8
422,248 + PfGW456L13_363 0.19 -2.5
422,248 + PfGW456L13_363 0.19 +1.4
422,248 + PfGW456L13_363 0.19 +0.7
422,249 - PfGW456L13_363 0.19 +1.9
422,249 - PfGW456L13_363 0.19 +1.8
422,249 - PfGW456L13_363 0.19 +1.6
422,249 - PfGW456L13_363 0.19 +2.3
422,249 - PfGW456L13_363 0.19 +2.5
422,249 - PfGW456L13_363 0.19 -0.7
422,249 - PfGW456L13_363 0.19 -0.8
422,249 - PfGW456L13_363 0.19 +1.0
422,255 + PfGW456L13_363 0.19 +0.4
422,255 + PfGW456L13_363 0.19 +2.1
422,267 + PfGW456L13_363 0.20 +1.7
422,267 + PfGW456L13_363 0.20 -0.4
422,267 + PfGW456L13_363 0.20 +2.2
422,267 + PfGW456L13_363 0.20 -2.9
422,267 + PfGW456L13_363 0.20 +1.0
422,267 + PfGW456L13_363 0.20 -0.9
422,268 - PfGW456L13_363 0.20 -2.1
422,268 - PfGW456L13_363 0.20 -1.6
422,268 - PfGW456L13_363 0.20 +0.8
422,268 - PfGW456L13_363 0.20 +1.5
422,268 - PfGW456L13_363 0.20 -1.5
422,268 - PfGW456L13_363 0.20 -3.1
422,349 + PfGW456L13_363 0.25 -0.9
422,399 + PfGW456L13_363 0.28 -1.7
422,399 + PfGW456L13_363 0.28 -2.2
422,399 + PfGW456L13_363 0.28 -0.7
422,400 - PfGW456L13_363 0.28 -4.1
422,510 + PfGW456L13_363 0.34 -1.7
422,510 + PfGW456L13_363 0.34 -0.5
422,510 + PfGW456L13_363 0.34 -1.7
422,510 + PfGW456L13_363 0.34 +0.8
422,510 + PfGW456L13_363 0.34 -0.4
422,510 + PfGW456L13_363 0.34 -1.7
422,510 + PfGW456L13_363 0.34 +1.7
422,511 - PfGW456L13_363 0.34 +1.2
422,511 - PfGW456L13_363 0.34 -2.8
422,511 - PfGW456L13_363 0.34 -2.9
422,511 - PfGW456L13_363 0.34 +0.7
422,511 - PfGW456L13_363 0.34 +0.7
422,511 - PfGW456L13_363 0.34 +1.8
422,511 - PfGW456L13_363 0.34 -2.3
422,511 - PfGW456L13_363 0.34 +0.5
422,511 - PfGW456L13_363 0.34 +0.4
422,531 + PfGW456L13_363 0.36 -3.6

Or see this region's nucleotide sequence