Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3371 and PfGW456L13_3372 are separated by 251 nucleotides PfGW456L13_3372 and PfGW456L13_3373 are separated by 37 nucleotides PfGW456L13_3373 and PfGW456L13_3374 are separated by 102 nucleotides
PfGW456L13_3371 - Glycine cleavage system transcriptional activator, at 3,784,355 to 3,785,239
_3371
PfGW456L13_3372 - hypothetical protein, at 3,785,491 to 3,785,625
_3372
PfGW456L13_3373 - hypothetical protein, at 3,785,663 to 3,786,157
_3373
PfGW456L13_3374 - TonB-dependent siderophore receptor, at 3,786,260 to 3,788,509
_3374
Position (kb)
3785
3786 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3784.584 kb on + strand, within PfGW456L13_3371 at 3784.584 kb on + strand, within PfGW456L13_3371 at 3784.584 kb on + strand at 3784.584 kb on + strand, within PfGW456L13_3371 at 3784.624 kb on + strand, within PfGW456L13_3371 at 3784.625 kb on - strand, within PfGW456L13_3371 at 3784.625 kb on - strand, within PfGW456L13_3371 at 3784.625 kb on - strand, within PfGW456L13_3371 at 3784.773 kb on + strand, within PfGW456L13_3371 at 3784.860 kb on + strand, within PfGW456L13_3371 at 3784.860 kb on + strand, within PfGW456L13_3371 at 3785.391 kb on + strand at 3785.391 kb on + strand at 3785.393 kb on + strand at 3785.394 kb on - strand at 3785.394 kb on - strand at 3785.394 kb on - strand at 3785.394 kb on - strand at 3785.394 kb on - strand at 3785.394 kb on - strand at 3785.394 kb on - strand at 3785.402 kb on + strand at 3785.416 kb on + strand at 3785.416 kb on + strand at 3785.610 kb on - strand, within PfGW456L13_3372 at 3785.610 kb on - strand, within PfGW456L13_3372 at 3785.610 kb on - strand, within PfGW456L13_3372 at 3785.616 kb on + strand at 3785.616 kb on + strand at 3785.623 kb on + strand at 3785.623 kb on + strand at 3785.623 kb on + strand at 3785.624 kb on - strand at 3785.624 kb on - strand at 3785.624 kb on - strand at 3785.637 kb on + strand at 3785.727 kb on - strand, within PfGW456L13_3373 at 3785.744 kb on + strand, within PfGW456L13_3373 at 3785.744 kb on + strand, within PfGW456L13_3373 at 3785.745 kb on - strand, within PfGW456L13_3373 at 3785.849 kb on + strand, within PfGW456L13_3373 at 3785.849 kb on + strand, within PfGW456L13_3373 at 3785.849 kb on + strand, within PfGW456L13_3373 at 3786.098 kb on + strand, within PfGW456L13_3373 at 3786.099 kb on - strand, within PfGW456L13_3373 at 3786.449 kb on - strand at 3786.470 kb on + strand at 3786.470 kb on + strand at 3786.470 kb on + strand at 3786.471 kb on - strand at 3786.471 kb on - strand at 3786.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 3,784,584 + PfGW456L13_3371 0.26 +1.5 3,784,584 + PfGW456L13_3371 0.26 -0.9 3,784,584 + +1.1 3,784,584 + PfGW456L13_3371 0.26 +1.8 3,784,624 + PfGW456L13_3371 0.30 -1.6 3,784,625 - PfGW456L13_3371 0.31 +0.1 3,784,625 - PfGW456L13_3371 0.31 -0.2 3,784,625 - PfGW456L13_3371 0.31 +0.9 3,784,773 + PfGW456L13_3371 0.47 -3.6 3,784,860 + PfGW456L13_3371 0.57 +1.8 3,784,860 + PfGW456L13_3371 0.57 +1.5 3,785,391 + -2.8 3,785,391 + -1.5 3,785,393 + +0.1 3,785,394 - -0.1 3,785,394 - -2.8 3,785,394 - -0.4 3,785,394 - +0.3 3,785,394 - +0.0 3,785,394 - -2.4 3,785,394 - +0.3 3,785,402 + -2.2 3,785,416 + -1.1 3,785,416 + -0.3 3,785,610 - PfGW456L13_3372 0.88 -0.8 3,785,610 - PfGW456L13_3372 0.88 -2.8 3,785,610 - PfGW456L13_3372 0.88 -1.1 3,785,616 + -0.5 3,785,616 + +1.0 3,785,623 + -0.1 3,785,623 + +1.2 3,785,623 + +2.1 3,785,624 - +1.6 3,785,624 - +1.0 3,785,624 - +0.8 3,785,637 + +2.6 3,785,727 - PfGW456L13_3373 0.13 -1.5 3,785,744 + PfGW456L13_3373 0.16 +0.5 3,785,744 + PfGW456L13_3373 0.16 +1.8 3,785,745 - PfGW456L13_3373 0.17 +0.4 3,785,849 + PfGW456L13_3373 0.38 +0.5 3,785,849 + PfGW456L13_3373 0.38 -0.4 3,785,849 + PfGW456L13_3373 0.38 -0.3 3,786,098 + PfGW456L13_3373 0.88 +0.9 3,786,099 - PfGW456L13_3373 0.88 -3.4 3,786,449 - -2.0 3,786,470 + +0.7 3,786,470 + -1.8 3,786,470 + -2.9 3,786,471 - -3.1 3,786,471 - -1.2 3,786,471 - -2.4
Or see this region's nucleotide sequence