Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3372

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3371 and PfGW456L13_3372 are separated by 251 nucleotidesPfGW456L13_3372 and PfGW456L13_3373 are separated by 37 nucleotidesPfGW456L13_3373 and PfGW456L13_3374 are separated by 102 nucleotides PfGW456L13_3371 - Glycine cleavage system transcriptional activator, at 3,784,355 to 3,785,239 _3371 PfGW456L13_3372 - hypothetical protein, at 3,785,491 to 3,785,625 _3372 PfGW456L13_3373 - hypothetical protein, at 3,785,663 to 3,786,157 _3373 PfGW456L13_3374 - TonB-dependent siderophore receptor, at 3,786,260 to 3,788,509 _3374 Position (kb) 3785 3786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3784.584 kb on + strand, within PfGW456L13_3371at 3784.584 kb on + strand, within PfGW456L13_3371at 3784.584 kb on + strandat 3784.584 kb on + strand, within PfGW456L13_3371at 3784.624 kb on + strand, within PfGW456L13_3371at 3784.625 kb on - strand, within PfGW456L13_3371at 3784.625 kb on - strand, within PfGW456L13_3371at 3784.625 kb on - strand, within PfGW456L13_3371at 3784.773 kb on + strand, within PfGW456L13_3371at 3784.860 kb on + strand, within PfGW456L13_3371at 3784.860 kb on + strand, within PfGW456L13_3371at 3785.391 kb on + strandat 3785.391 kb on + strandat 3785.393 kb on + strandat 3785.394 kb on - strandat 3785.394 kb on - strandat 3785.394 kb on - strandat 3785.394 kb on - strandat 3785.394 kb on - strandat 3785.394 kb on - strandat 3785.394 kb on - strandat 3785.402 kb on + strandat 3785.416 kb on + strandat 3785.416 kb on + strandat 3785.610 kb on - strand, within PfGW456L13_3372at 3785.610 kb on - strand, within PfGW456L13_3372at 3785.610 kb on - strand, within PfGW456L13_3372at 3785.616 kb on + strandat 3785.616 kb on + strandat 3785.623 kb on + strandat 3785.623 kb on + strandat 3785.623 kb on + strandat 3785.624 kb on - strandat 3785.624 kb on - strandat 3785.624 kb on - strandat 3785.637 kb on + strandat 3785.727 kb on - strand, within PfGW456L13_3373at 3785.744 kb on + strand, within PfGW456L13_3373at 3785.744 kb on + strand, within PfGW456L13_3373at 3785.745 kb on - strand, within PfGW456L13_3373at 3785.849 kb on + strand, within PfGW456L13_3373at 3785.849 kb on + strand, within PfGW456L13_3373at 3785.849 kb on + strand, within PfGW456L13_3373at 3786.098 kb on + strand, within PfGW456L13_3373at 3786.099 kb on - strand, within PfGW456L13_3373at 3786.449 kb on - strandat 3786.470 kb on + strandat 3786.470 kb on + strandat 3786.470 kb on + strandat 3786.471 kb on - strandat 3786.471 kb on - strandat 3786.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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3,784,584 + PfGW456L13_3371 0.26 +1.5
3,784,584 + PfGW456L13_3371 0.26 -0.9
3,784,584 + +1.1
3,784,584 + PfGW456L13_3371 0.26 +1.8
3,784,624 + PfGW456L13_3371 0.30 -1.6
3,784,625 - PfGW456L13_3371 0.31 +0.1
3,784,625 - PfGW456L13_3371 0.31 -0.2
3,784,625 - PfGW456L13_3371 0.31 +0.9
3,784,773 + PfGW456L13_3371 0.47 -3.6
3,784,860 + PfGW456L13_3371 0.57 +1.8
3,784,860 + PfGW456L13_3371 0.57 +1.5
3,785,391 + -2.8
3,785,391 + -1.5
3,785,393 + +0.1
3,785,394 - -0.1
3,785,394 - -2.8
3,785,394 - -0.4
3,785,394 - +0.3
3,785,394 - +0.0
3,785,394 - -2.4
3,785,394 - +0.3
3,785,402 + -2.2
3,785,416 + -1.1
3,785,416 + -0.3
3,785,610 - PfGW456L13_3372 0.88 -0.8
3,785,610 - PfGW456L13_3372 0.88 -2.8
3,785,610 - PfGW456L13_3372 0.88 -1.1
3,785,616 + -0.5
3,785,616 + +1.0
3,785,623 + -0.1
3,785,623 + +1.2
3,785,623 + +2.1
3,785,624 - +1.6
3,785,624 - +1.0
3,785,624 - +0.8
3,785,637 + +2.6
3,785,727 - PfGW456L13_3373 0.13 -1.5
3,785,744 + PfGW456L13_3373 0.16 +0.5
3,785,744 + PfGW456L13_3373 0.16 +1.8
3,785,745 - PfGW456L13_3373 0.17 +0.4
3,785,849 + PfGW456L13_3373 0.38 +0.5
3,785,849 + PfGW456L13_3373 0.38 -0.4
3,785,849 + PfGW456L13_3373 0.38 -0.3
3,786,098 + PfGW456L13_3373 0.88 +0.9
3,786,099 - PfGW456L13_3373 0.88 -3.4
3,786,449 - -2.0
3,786,470 + +0.7
3,786,470 + -1.8
3,786,470 + -2.9
3,786,471 - -3.1
3,786,471 - -1.2
3,786,471 - -2.4

Or see this region's nucleotide sequence