Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_30

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_29 and PfGW456L13_30 are separated by 223 nucleotidesPfGW456L13_30 and PfGW456L13_31 are separated by 2 nucleotidesPfGW456L13_31 and PfGW456L13_32 are separated by 58 nucleotides PfGW456L13_29 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 34,910 to 36,187 _29 PfGW456L13_30 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 36,411 to 37,763 _30 PfGW456L13_31 - Acyl dehydratase, at 37,766 to 38,620 _31 PfGW456L13_32 - hypothetical protein, at 38,679 to 39,035 _32 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 35.451 kb on + strand, within PfGW456L13_29at 35.452 kb on - strand, within PfGW456L13_29at 35.452 kb on - strand, within PfGW456L13_29at 35.452 kb on - strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.935 kb on - strand, within PfGW456L13_29at 35.935 kb on - strand, within PfGW456L13_29at 35.970 kb on - strand, within PfGW456L13_29at 35.970 kb on - strand, within PfGW456L13_29at 36.057 kb on + strand, within PfGW456L13_29at 36.057 kb on + strand, within PfGW456L13_29at 36.058 kb on - strand, within PfGW456L13_29at 36.058 kb on - strand, within PfGW456L13_29at 36.058 kb on - strand, within PfGW456L13_29at 36.118 kb on - strandat 36.118 kb on - strandat 36.286 kb on + strandat 36.286 kb on + strandat 36.287 kb on - strandat 36.287 kb on - strandat 36.287 kb on - strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.316 kb on - strandat 36.316 kb on - strandat 36.316 kb on - strandat 36.316 kb on - strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.333 kb on - strandat 36.339 kb on + strandat 36.339 kb on + strandat 36.340 kb on - strandat 36.340 kb on - strandat 36.424 kb on - strandat 36.424 kb on - strandat 36.424 kb on - strandat 36.424 kb on - strandat 36.426 kb on - strandat 36.529 kb on + strandat 36.529 kb on + strandat 36.529 kb on + strandat 36.529 kb on + strandat 36.530 kb on - strandat 36.530 kb on - strandat 36.530 kb on - strandat 36.530 kb on - strandat 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.616 kb on - strand, within PfGW456L13_30at 36.616 kb on - strand, within PfGW456L13_30at 36.877 kb on + strand, within PfGW456L13_30at 36.878 kb on - strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 37.330 kb on - strand, within PfGW456L13_30at 37.372 kb on + strand, within PfGW456L13_30at 37.372 kb on + strand, within PfGW456L13_30at 37.372 kb on + strand, within PfGW456L13_30at 37.373 kb on - strand, within PfGW456L13_30at 37.373 kb on - strand, within PfGW456L13_30at 37.476 kb on + strand, within PfGW456L13_30at 37.736 kb on - strandat 37.761 kb on + strandat 37.761 kb on + strandat 37.817 kb on + strandat 37.818 kb on - strandat 37.818 kb on - strandat 37.818 kb on - strandat 37.964 kb on + strand, within PfGW456L13_31at 37.964 kb on + strand, within PfGW456L13_31at 37.965 kb on - strand, within PfGW456L13_31at 38.068 kb on - strand, within PfGW456L13_31at 38.068 kb on - strand, within PfGW456L13_31at 38.345 kb on + strand, within PfGW456L13_31at 38.345 kb on + strand, within PfGW456L13_31at 38.345 kb on + strand, within PfGW456L13_31at 38.346 kb on - strand, within PfGW456L13_31at 38.590 kb on + strandat 38.590 kb on + strandat 38.590 kb on + strandat 38.590 kb on + strandat 38.590 kb on + strandat 38.591 kb on - strandat 38.591 kb on - strandat 38.591 kb on - strandat 38.591 kb on - strandat 38.591 kb on - strandat 38.591 kb on - strandat 38.631 kb on - strandat 38.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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35,451 + PfGW456L13_29 0.42 -0.8
35,452 - PfGW456L13_29 0.42 +2.4
35,452 - PfGW456L13_29 0.42 -0.7
35,452 - PfGW456L13_29 0.42 +1.1
35,934 + PfGW456L13_29 0.80 -2.6
35,934 + PfGW456L13_29 0.80 -0.2
35,934 + PfGW456L13_29 0.80 -0.8
35,934 + PfGW456L13_29 0.80 -1.0
35,934 + PfGW456L13_29 0.80 +0.4
35,935 - PfGW456L13_29 0.80 +1.0
35,935 - PfGW456L13_29 0.80 -2.6
35,970 - PfGW456L13_29 0.83 +0.5
35,970 - PfGW456L13_29 0.83 +0.6
36,057 + PfGW456L13_29 0.90 +1.3
36,057 + PfGW456L13_29 0.90 -0.2
36,058 - PfGW456L13_29 0.90 -1.0
36,058 - PfGW456L13_29 0.90 +2.0
36,058 - PfGW456L13_29 0.90 +2.9
36,118 - +1.8
36,118 - +0.6
36,286 + +1.6
36,286 + +0.4
36,287 - -2.4
36,287 - +1.1
36,287 - -1.7
36,315 + -2.4
36,315 + -2.8
36,315 + +0.3
36,315 + +0.4
36,315 + -3.1
36,315 + +1.4
36,316 - -0.8
36,316 - -2.1
36,316 - -2.8
36,316 - -0.8
36,332 + -3.1
36,332 + +0.7
36,332 + -2.6
36,332 + -2.6
36,333 - +0.5
36,339 + -2.8
36,339 + +0.7
36,340 - +1.4
36,340 - +1.0
36,424 - +0.8
36,424 - +2.0
36,424 - +0.3
36,424 - +2.5
36,426 - -0.1
36,529 + -0.2
36,529 + -2.5
36,529 + +2.7
36,529 + +1.6
36,530 - -2.0
36,530 - +1.8
36,530 - -0.7
36,530 - -3.7
36,609 + PfGW456L13_30 0.15 +1.1
36,609 + PfGW456L13_30 0.15 +0.2
36,609 + PfGW456L13_30 0.15 +0.9
36,609 + PfGW456L13_30 0.15 -0.3
36,609 + PfGW456L13_30 0.15 -1.0
36,610 - PfGW456L13_30 0.15 +1.0
36,610 - PfGW456L13_30 0.15 -2.5
36,610 - PfGW456L13_30 0.15 +1.2
36,610 - PfGW456L13_30 0.15 +0.8
36,615 + PfGW456L13_30 0.15 -2.6
36,615 + PfGW456L13_30 0.15 -1.8
36,615 + PfGW456L13_30 0.15 +1.0
36,615 + PfGW456L13_30 0.15 +2.4
36,615 + PfGW456L13_30 0.15 -1.2
36,615 + PfGW456L13_30 0.15 -1.3
36,616 - PfGW456L13_30 0.15 -2.5
36,616 - PfGW456L13_30 0.15 +2.2
36,877 + PfGW456L13_30 0.34 +3.5
36,878 - PfGW456L13_30 0.35 -1.4
36,906 + PfGW456L13_30 0.37 -1.0
36,906 + PfGW456L13_30 0.37 -1.4
36,906 + PfGW456L13_30 0.37 -1.6
36,906 + PfGW456L13_30 0.37 -3.1
36,906 + PfGW456L13_30 0.37 -1.4
36,906 + PfGW456L13_30 0.37 +1.3
36,906 + PfGW456L13_30 0.37 -3.4
36,906 + PfGW456L13_30 0.37 +1.0
36,907 - PfGW456L13_30 0.37 +0.7
36,907 - PfGW456L13_30 0.37 -2.3
36,907 - PfGW456L13_30 0.37 -1.4
36,907 - PfGW456L13_30 0.37 +1.2
36,907 - PfGW456L13_30 0.37 -1.7
36,907 - PfGW456L13_30 0.37 +1.6
37,330 - PfGW456L13_30 0.68 -0.5
37,372 + PfGW456L13_30 0.71 -0.2
37,372 + PfGW456L13_30 0.71 -0.4
37,372 + PfGW456L13_30 0.71 +0.8
37,373 - PfGW456L13_30 0.71 +1.9
37,373 - PfGW456L13_30 0.71 +1.8
37,476 + PfGW456L13_30 0.79 -1.2
37,736 - +0.4
37,761 + -2.9
37,761 + -2.5
37,817 + +2.0
37,818 - +0.4
37,818 - -1.0
37,818 - -1.7
37,964 + PfGW456L13_31 0.23 -2.5
37,964 + PfGW456L13_31 0.23 +1.2
37,965 - PfGW456L13_31 0.23 +2.8
38,068 - PfGW456L13_31 0.35 +1.4
38,068 - PfGW456L13_31 0.35 +1.2
38,345 + PfGW456L13_31 0.68 -2.4
38,345 + PfGW456L13_31 0.68 -3.5
38,345 + PfGW456L13_31 0.68 -1.2
38,346 - PfGW456L13_31 0.68 -0.4
38,590 + +2.1
38,590 + +1.5
38,590 + +0.6
38,590 + +0.1
38,590 + -3.0
38,591 - -1.9
38,591 - -0.2
38,591 - +1.8
38,591 - +0.2
38,591 - -1.0
38,591 - +1.5
38,631 - +1.0
38,699 + +0.1

Or see this region's nucleotide sequence