Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2800

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2798 and PfGW456L13_2799 are separated by 60 nucleotidesPfGW456L13_2799 and PfGW456L13_2800 are separated by 89 nucleotidesPfGW456L13_2800 and PfGW456L13_2801 are separated by 133 nucleotides PfGW456L13_2798 - Putative TEGT family carrier/transport protein, at 3,103,449 to 3,104,120 _2798 PfGW456L13_2799 - hypothetical protein, at 3,104,181 to 3,104,477 _2799 PfGW456L13_2800 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 3,104,567 to 3,105,004 _2800 PfGW456L13_2801 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,105,138 to 3,106,034 _2801 Position (kb) 3104 3105 3106Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3103.572 kb on + strand, within PfGW456L13_2798at 3103.572 kb on + strand, within PfGW456L13_2798at 3103.573 kb on - strand, within PfGW456L13_2798at 3103.573 kb on - strand, within PfGW456L13_2798at 3103.573 kb on - strand, within PfGW456L13_2798at 3103.573 kb on - strand, within PfGW456L13_2798at 3103.632 kb on + strand, within PfGW456L13_2798at 3103.632 kb on + strand, within PfGW456L13_2798at 3103.632 kb on + strand, within PfGW456L13_2798at 3103.632 kb on + strand, within PfGW456L13_2798at 3103.633 kb on - strand, within PfGW456L13_2798at 3103.633 kb on - strand, within PfGW456L13_2798at 3103.633 kb on - strand, within PfGW456L13_2798at 3103.633 kb on - strand, within PfGW456L13_2798at 3103.824 kb on + strand, within PfGW456L13_2798at 3103.824 kb on + strand, within PfGW456L13_2798at 3103.824 kb on + strand, within PfGW456L13_2798at 3103.825 kb on - strand, within PfGW456L13_2798at 3103.888 kb on + strand, within PfGW456L13_2798at 3103.888 kb on + strand, within PfGW456L13_2798at 3103.889 kb on - strand, within PfGW456L13_2798at 3103.889 kb on - strand, within PfGW456L13_2798at 3104.024 kb on + strand, within PfGW456L13_2798at 3104.024 kb on + strand, within PfGW456L13_2798at 3104.025 kb on - strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.028 kb on + strand, within PfGW456L13_2798at 3104.029 kb on - strand, within PfGW456L13_2798at 3104.029 kb on - strand, within PfGW456L13_2798at 3104.029 kb on - strand, within PfGW456L13_2798at 3104.029 kb on - strand, within PfGW456L13_2798at 3104.029 kb on - strand, within PfGW456L13_2798at 3104.029 kb on - strand, within PfGW456L13_2798at 3104.039 kb on + strand, within PfGW456L13_2798at 3104.052 kb on + strand, within PfGW456L13_2798at 3104.052 kb on + strand, within PfGW456L13_2798at 3104.052 kb on + strand, within PfGW456L13_2798at 3104.052 kb on + strand, within PfGW456L13_2798at 3104.052 kb on + strand, within PfGW456L13_2798at 3104.053 kb on - strandat 3104.053 kb on - strandat 3104.053 kb on - strandat 3104.053 kb on - strandat 3104.053 kb on - strandat 3104.056 kb on + strandat 3104.056 kb on + strandat 3104.057 kb on - strandat 3104.057 kb on - strandat 3104.057 kb on - strandat 3104.064 kb on + strandat 3104.064 kb on + strandat 3104.064 kb on + strandat 3104.064 kb on + strandat 3104.065 kb on - strandat 3104.182 kb on + strandat 3104.182 kb on + strandat 3104.183 kb on - strandat 3104.183 kb on - strandat 3104.183 kb on - strandat 3104.183 kb on - strandat 3104.183 kb on - strandat 3104.183 kb on - strandat 3104.183 kb on - strandat 3104.221 kb on + strand, within PfGW456L13_2799at 3104.230 kb on + strand, within PfGW456L13_2799at 3104.231 kb on - strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strandat 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.304 kb on + strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.305 kb on - strand, within PfGW456L13_2799at 3104.344 kb on + strand, within PfGW456L13_2799at 3104.357 kb on - strand, within PfGW456L13_2799at 3104.395 kb on + strand, within PfGW456L13_2799at 3104.481 kb on - strandat 3104.490 kb on + strandat 3104.490 kb on + strandat 3104.491 kb on - strandat 3104.493 kb on + strandat 3104.493 kb on + strandat 3104.493 kb on + strandat 3104.493 kb on + strandat 3104.493 kb on + strandat 3104.493 kb on + strandat 3104.494 kb on - strandat 3104.494 kb on - strandat 3104.494 kb on - strandat 3104.543 kb on - strandat 3104.543 kb on - strandat 3104.543 kb on - strandat 3104.561 kb on + strandat 3104.562 kb on - strandat 3104.562 kb on - strandat 3104.620 kb on + strand, within PfGW456L13_2800at 3104.797 kb on + strand, within PfGW456L13_2800at 3104.854 kb on - strand, within PfGW456L13_2800at 3105.020 kb on + strandat 3105.111 kb on + strandat 3105.111 kb on + strandat 3105.111 kb on + strandat 3105.112 kb on - strandat 3105.112 kb on - strandat 3105.112 kb on - strandat 3105.154 kb on + strandat 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.441 kb on + strand, within PfGW456L13_2801at 3105.442 kb on - strand, within PfGW456L13_2801at 3105.442 kb on - strand, within PfGW456L13_2801at 3105.797 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.819 kb on + strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.820 kb on - strand, within PfGW456L13_2801at 3105.831 kb on + strand, within PfGW456L13_2801at 3105.832 kb on - strand, within PfGW456L13_2801

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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3,103,572 + PfGW456L13_2798 0.18 +0.2
3,103,572 + PfGW456L13_2798 0.18 +0.9
3,103,573 - PfGW456L13_2798 0.18 -0.8
3,103,573 - PfGW456L13_2798 0.18 +1.0
3,103,573 - PfGW456L13_2798 0.18 -0.9
3,103,573 - PfGW456L13_2798 0.18 -1.4
3,103,632 + PfGW456L13_2798 0.27 -0.4
3,103,632 + PfGW456L13_2798 0.27 -1.8
3,103,632 + PfGW456L13_2798 0.27 +1.2
3,103,632 + PfGW456L13_2798 0.27 -1.1
3,103,633 - PfGW456L13_2798 0.27 -2.8
3,103,633 - PfGW456L13_2798 0.27 -1.4
3,103,633 - PfGW456L13_2798 0.27 -2.2
3,103,633 - PfGW456L13_2798 0.27 -1.3
3,103,824 + PfGW456L13_2798 0.56 +0.8
3,103,824 + PfGW456L13_2798 0.56 -0.3
3,103,824 + PfGW456L13_2798 0.56 +0.2
3,103,825 - PfGW456L13_2798 0.56 -2.8
3,103,888 + PfGW456L13_2798 0.65 +1.4
3,103,888 + PfGW456L13_2798 0.65 +1.2
3,103,889 - PfGW456L13_2798 0.65 -1.3
3,103,889 - PfGW456L13_2798 0.65 -1.6
3,104,024 + PfGW456L13_2798 0.86 -2.1
3,104,024 + PfGW456L13_2798 0.86 +1.7
3,104,025 - PfGW456L13_2798 0.86 +0.2
3,104,028 + PfGW456L13_2798 0.86 -0.4
3,104,028 + PfGW456L13_2798 0.86 -0.1
3,104,028 + PfGW456L13_2798 0.86 +1.6
3,104,028 + PfGW456L13_2798 0.86 +1.6
3,104,028 + PfGW456L13_2798 0.86 -2.6
3,104,028 + PfGW456L13_2798 0.86 -1.3
3,104,028 + PfGW456L13_2798 0.86 -3.5
3,104,029 - PfGW456L13_2798 0.86 -1.1
3,104,029 - PfGW456L13_2798 0.86 +2.3
3,104,029 - PfGW456L13_2798 0.86 +0.4
3,104,029 - PfGW456L13_2798 0.86 -1.5
3,104,029 - PfGW456L13_2798 0.86 +2.4
3,104,029 - PfGW456L13_2798 0.86 -1.8
3,104,039 + PfGW456L13_2798 0.88 +0.1
3,104,052 + PfGW456L13_2798 0.90 +0.3
3,104,052 + PfGW456L13_2798 0.90 +0.5
3,104,052 + PfGW456L13_2798 0.90 +0.2
3,104,052 + PfGW456L13_2798 0.90 +1.9
3,104,052 + PfGW456L13_2798 0.90 -2.4
3,104,053 - -3.4
3,104,053 - -1.3
3,104,053 - -1.9
3,104,053 - +0.6
3,104,053 - +0.6
3,104,056 + -0.3
3,104,056 + -0.8
3,104,057 - +0.7
3,104,057 - +0.0
3,104,057 - +0.4
3,104,064 + -0.1
3,104,064 + -2.1
3,104,064 + -2.9
3,104,064 + +1.0
3,104,065 - +2.8
3,104,182 + +0.6
3,104,182 + +0.4
3,104,183 - +1.6
3,104,183 - -3.0
3,104,183 - +1.0
3,104,183 - -0.8
3,104,183 - -0.5
3,104,183 - -0.5
3,104,183 - +0.1
3,104,221 + PfGW456L13_2799 0.13 +0.2
3,104,230 + PfGW456L13_2799 0.16 +0.1
3,104,231 - PfGW456L13_2799 0.17 +0.1
3,104,304 + PfGW456L13_2799 0.41 -1.5
3,104,304 + +1.9
3,104,304 + PfGW456L13_2799 0.41 -1.3
3,104,304 + PfGW456L13_2799 0.41 -0.3
3,104,304 + PfGW456L13_2799 0.41 -3.1
3,104,304 + PfGW456L13_2799 0.41 -1.2
3,104,304 + PfGW456L13_2799 0.41 -1.6
3,104,304 + PfGW456L13_2799 0.41 +0.3
3,104,304 + PfGW456L13_2799 0.41 -1.7
3,104,304 + PfGW456L13_2799 0.41 -2.8
3,104,304 + PfGW456L13_2799 0.41 +1.5
3,104,305 - PfGW456L13_2799 0.42 +1.9
3,104,305 - PfGW456L13_2799 0.42 -0.2
3,104,305 - PfGW456L13_2799 0.42 +0.5
3,104,305 - PfGW456L13_2799 0.42 -0.1
3,104,305 - PfGW456L13_2799 0.42 -1.8
3,104,305 - PfGW456L13_2799 0.42 -0.6
3,104,305 - PfGW456L13_2799 0.42 -0.9
3,104,305 - PfGW456L13_2799 0.42 +0.6
3,104,305 - PfGW456L13_2799 0.42 -0.3
3,104,305 - PfGW456L13_2799 0.42 -1.0
3,104,344 + PfGW456L13_2799 0.55 -1.9
3,104,357 - PfGW456L13_2799 0.59 +0.3
3,104,395 + PfGW456L13_2799 0.72 -2.3
3,104,481 - +1.3
3,104,490 + +0.2
3,104,490 + +2.7
3,104,491 - -0.3
3,104,493 + +1.7
3,104,493 + -0.8
3,104,493 + +0.3
3,104,493 + -1.1
3,104,493 + -2.2
3,104,493 + -0.9
3,104,494 - +0.9
3,104,494 - -0.9
3,104,494 - -2.7
3,104,543 - +2.0
3,104,543 - -2.9
3,104,543 - -1.5
3,104,561 + -0.6
3,104,562 - -0.6
3,104,562 - +1.1
3,104,620 + PfGW456L13_2800 0.12 -1.6
3,104,797 + PfGW456L13_2800 0.53 -0.6
3,104,854 - PfGW456L13_2800 0.66 -2.8
3,105,020 + -1.2
3,105,111 + +0.3
3,105,111 + +0.4
3,105,111 + +2.4
3,105,112 - +1.7
3,105,112 - -1.1
3,105,112 - -4.0
3,105,154 + -2.4
3,105,441 + PfGW456L13_2801 0.34 -3.1
3,105,441 + PfGW456L13_2801 0.34 +0.2
3,105,441 + PfGW456L13_2801 0.34 +0.4
3,105,441 + PfGW456L13_2801 0.34 -0.8
3,105,441 + PfGW456L13_2801 0.34 +0.2
3,105,441 + PfGW456L13_2801 0.34 -2.3
3,105,441 + PfGW456L13_2801 0.34 -1.1
3,105,441 + PfGW456L13_2801 0.34 +0.6
3,105,442 - PfGW456L13_2801 0.34 +1.6
3,105,442 - PfGW456L13_2801 0.34 +0.5
3,105,797 + PfGW456L13_2801 0.73 -2.6
3,105,819 + PfGW456L13_2801 0.76 -0.3
3,105,819 + PfGW456L13_2801 0.76 +0.4
3,105,819 + PfGW456L13_2801 0.76 -2.3
3,105,819 + PfGW456L13_2801 0.76 -0.5
3,105,819 + PfGW456L13_2801 0.76 +0.8
3,105,819 + PfGW456L13_2801 0.76 +0.0
3,105,819 + PfGW456L13_2801 0.76 -2.5
3,105,819 + PfGW456L13_2801 0.76 +0.2
3,105,819 + PfGW456L13_2801 0.76 +1.1
3,105,819 + PfGW456L13_2801 0.76 -2.3
3,105,819 + PfGW456L13_2801 0.76 +1.9
3,105,819 + PfGW456L13_2801 0.76 +1.4
3,105,819 + PfGW456L13_2801 0.76 +1.2
3,105,820 - PfGW456L13_2801 0.76 +0.8
3,105,820 - PfGW456L13_2801 0.76 +2.1
3,105,820 - PfGW456L13_2801 0.76 +1.9
3,105,820 - PfGW456L13_2801 0.76 +0.1
3,105,820 - PfGW456L13_2801 0.76 -1.2
3,105,820 - PfGW456L13_2801 0.76 +1.6
3,105,820 - PfGW456L13_2801 0.76 +0.5
3,105,820 - PfGW456L13_2801 0.76 +0.8
3,105,820 - PfGW456L13_2801 0.76 +1.5
3,105,820 - PfGW456L13_2801 0.76 +1.7
3,105,820 - PfGW456L13_2801 0.76 +2.5
3,105,820 - PfGW456L13_2801 0.76 -0.6
3,105,831 + PfGW456L13_2801 0.77 +0.4
3,105,832 - PfGW456L13_2801 0.77 +2.1

Or see this region's nucleotide sequence