Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_279

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_277 and PfGW456L13_278 are separated by 13 nucleotidesPfGW456L13_278 and PfGW456L13_279 overlap by 4 nucleotidesPfGW456L13_279 and PfGW456L13_280 overlap by 4 nucleotidesPfGW456L13_280 and PfGW456L13_281 overlap by 1 nucleotides PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657 _277 PfGW456L13_278 - Type IV pilus biogenesis protein PilP, at 326,671 to 327,198 _278 PfGW456L13_279 - Type IV pilus biogenesis protein PilO, at 327,195 to 327,818 _279 PfGW456L13_280 - Type IV pilus biogenesis protein PilN, at 327,815 to 328,381 _280 PfGW456L13_281 - Type IV pilus biogenesis protein PilM, at 328,381 to 329,445 _281 Position (kb) 327 328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 326.292 kb on + strand, within PfGW456L13_277at 326.293 kb on - strand, within PfGW456L13_277at 326.309 kb on + strand, within PfGW456L13_277at 326.309 kb on + strand, within PfGW456L13_277at 326.310 kb on - strand, within PfGW456L13_277at 326.316 kb on + strand, within PfGW456L13_277at 326.317 kb on - strand, within PfGW456L13_277at 326.317 kb on - strand, within PfGW456L13_277at 326.595 kb on + strandat 326.595 kb on + strandat 326.595 kb on + strandat 326.596 kb on - strandat 326.616 kb on + strandat 326.617 kb on - strandat 326.658 kb on + strandat 326.659 kb on - strandat 326.672 kb on + strandat 326.852 kb on + strand, within PfGW456L13_278at 326.852 kb on + strand, within PfGW456L13_278at 326.852 kb on + strand, within PfGW456L13_278at 326.853 kb on - strand, within PfGW456L13_278at 326.918 kb on + strand, within PfGW456L13_278at 326.918 kb on + strand, within PfGW456L13_278at 326.919 kb on - strand, within PfGW456L13_278at 326.919 kb on - strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.030 kb on - strand, within PfGW456L13_278at 327.030 kb on - strand, within PfGW456L13_278at 327.045 kb on - strand, within PfGW456L13_278at 327.045 kb on - strand, within PfGW456L13_278at 327.055 kb on + strand, within PfGW456L13_278at 327.056 kb on - strand, within PfGW456L13_278at 327.056 kb on - strand, within PfGW456L13_278at 327.056 kb on - strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.108 kb on - strand, within PfGW456L13_278at 327.108 kb on - strand, within PfGW456L13_278at 327.108 kb on - strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.220 kb on + strandat 327.220 kb on + strandat 327.220 kb on + strandat 327.221 kb on - strandat 327.226 kb on + strandat 327.226 kb on + strandat 327.227 kb on - strandat 327.275 kb on + strand, within PfGW456L13_279at 327.306 kb on - strand, within PfGW456L13_279at 327.358 kb on + strand, within PfGW456L13_279at 327.359 kb on - strand, within PfGW456L13_279at 327.397 kb on + strand, within PfGW456L13_279at 327.398 kb on - strand, within PfGW456L13_279at 327.398 kb on - strand, within PfGW456L13_279at 327.464 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.566 kb on - strand, within PfGW456L13_279at 327.566 kb on - strand, within PfGW456L13_279at 327.566 kb on - strand, within PfGW456L13_279at 327.678 kb on - strand, within PfGW456L13_279at 327.683 kb on + strand, within PfGW456L13_279at 328.041 kb on + strand, within PfGW456L13_280at 328.041 kb on + strand, within PfGW456L13_280at 328.041 kb on + strand, within PfGW456L13_280at 328.042 kb on - strand, within PfGW456L13_280at 328.079 kb on + strand, within PfGW456L13_280at 328.215 kb on + strand, within PfGW456L13_280at 328.215 kb on + strand, within PfGW456L13_280at 328.215 kb on + strand, within PfGW456L13_280at 328.215 kb on + strand, within PfGW456L13_280at 328.215 kb on + strand, within PfGW456L13_280at 328.216 kb on - strand, within PfGW456L13_280at 328.216 kb on - strand, within PfGW456L13_280at 328.361 kb on + strandat 328.361 kb on + strandat 328.592 kb on + strand, within PfGW456L13_281at 328.593 kb on - strand, within PfGW456L13_281at 328.679 kb on + strand, within PfGW456L13_281at 328.679 kb on + strand, within PfGW456L13_281at 328.680 kb on - strand, within PfGW456L13_281at 328.680 kb on - strand, within PfGW456L13_281at 328.680 kb on - strand, within PfGW456L13_281at 328.680 kb on - strand, within PfGW456L13_281at 328.796 kb on + strand, within PfGW456L13_281at 328.796 kb on + strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.800 kb on + strand, within PfGW456L13_281

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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326,292 + PfGW456L13_277 0.82 +0.3
326,293 - PfGW456L13_277 0.82 -1.3
326,309 + PfGW456L13_277 0.83 -1.6
326,309 + PfGW456L13_277 0.83 +1.1
326,310 - PfGW456L13_277 0.83 +1.0
326,316 + PfGW456L13_277 0.83 -0.2
326,317 - PfGW456L13_277 0.84 -0.8
326,317 - PfGW456L13_277 0.84 +1.5
326,595 + +1.7
326,595 + +0.5
326,595 + +1.0
326,596 - +0.7
326,616 + +1.0
326,617 - -2.9
326,658 + +0.7
326,659 - -3.2
326,672 + +0.6
326,852 + PfGW456L13_278 0.34 -2.9
326,852 + PfGW456L13_278 0.34 -3.8
326,852 + PfGW456L13_278 0.34 +3.0
326,853 - PfGW456L13_278 0.34 -1.6
326,918 + PfGW456L13_278 0.47 -0.9
326,918 + PfGW456L13_278 0.47 -1.8
326,919 - PfGW456L13_278 0.47 +1.2
326,919 - PfGW456L13_278 0.47 -1.8
327,029 + PfGW456L13_278 0.68 +1.9
327,029 + PfGW456L13_278 0.68 -2.5
327,029 + PfGW456L13_278 0.68 +0.3
327,029 + PfGW456L13_278 0.68 -1.1
327,030 - PfGW456L13_278 0.68 -3.1
327,030 - PfGW456L13_278 0.68 +0.1
327,045 - PfGW456L13_278 0.71 +2.3
327,045 - PfGW456L13_278 0.71 -3.8
327,055 + PfGW456L13_278 0.73 +0.4
327,056 - PfGW456L13_278 0.73 +1.4
327,056 - PfGW456L13_278 0.73 -1.2
327,056 - PfGW456L13_278 0.73 -0.8
327,107 + PfGW456L13_278 0.83 -2.8
327,107 + PfGW456L13_278 0.83 -1.6
327,107 + PfGW456L13_278 0.83 -1.0
327,107 + PfGW456L13_278 0.83 -1.4
327,108 - PfGW456L13_278 0.83 +2.0
327,108 - PfGW456L13_278 0.83 -2.1
327,108 - PfGW456L13_278 0.83 -0.2
327,125 + PfGW456L13_278 0.86 +0.4
327,125 + PfGW456L13_278 0.86 +1.5
327,125 + PfGW456L13_278 0.86 +0.5
327,125 + PfGW456L13_278 0.86 -3.3
327,125 + PfGW456L13_278 0.86 +0.9
327,125 + PfGW456L13_278 0.86 -1.2
327,125 + PfGW456L13_278 0.86 -0.1
327,126 - PfGW456L13_278 0.86 -1.2
327,126 - PfGW456L13_278 0.86 -0.7
327,126 - PfGW456L13_278 0.86 -0.8
327,126 - PfGW456L13_278 0.86 -2.4
327,220 + -0.0
327,220 + +1.2
327,220 + -2.8
327,221 - +2.0
327,226 + -2.2
327,226 + +1.4
327,227 - +1.5
327,275 + PfGW456L13_279 0.13 +1.3
327,306 - PfGW456L13_279 0.18 +0.1
327,358 + PfGW456L13_279 0.26 +1.7
327,359 - PfGW456L13_279 0.26 -0.7
327,397 + PfGW456L13_279 0.32 +0.9
327,398 - PfGW456L13_279 0.33 +1.9
327,398 - PfGW456L13_279 0.33 -3.6
327,464 + PfGW456L13_279 0.43 +1.9
327,565 + PfGW456L13_279 0.59 -3.1
327,565 + PfGW456L13_279 0.59 -1.6
327,565 + PfGW456L13_279 0.59 +3.8
327,565 + PfGW456L13_279 0.59 -1.5
327,565 + PfGW456L13_279 0.59 +0.4
327,565 + PfGW456L13_279 0.59 +2.5
327,565 + PfGW456L13_279 0.59 -1.7
327,566 - PfGW456L13_279 0.59 +1.0
327,566 - PfGW456L13_279 0.59 -2.7
327,566 - PfGW456L13_279 0.59 +3.5
327,678 - PfGW456L13_279 0.77 +1.4
327,683 + PfGW456L13_279 0.78 +2.7
328,041 + PfGW456L13_280 0.40 -1.6
328,041 + PfGW456L13_280 0.40 +1.3
328,041 + PfGW456L13_280 0.40 +2.6
328,042 - PfGW456L13_280 0.40 -1.6
328,079 + PfGW456L13_280 0.47 +2.3
328,215 + PfGW456L13_280 0.71 -0.3
328,215 + PfGW456L13_280 0.71 +1.9
328,215 + PfGW456L13_280 0.71 -3.3
328,215 + PfGW456L13_280 0.71 +1.6
328,215 + PfGW456L13_280 0.71 -3.4
328,216 - PfGW456L13_280 0.71 +0.5
328,216 - PfGW456L13_280 0.71 -3.3
328,361 + -2.2
328,361 + -0.9
328,592 + PfGW456L13_281 0.20 +1.3
328,593 - PfGW456L13_281 0.20 -2.0
328,679 + PfGW456L13_281 0.28 +0.8
328,679 + PfGW456L13_281 0.28 -2.1
328,680 - PfGW456L13_281 0.28 +2.1
328,680 - PfGW456L13_281 0.28 -1.5
328,680 - PfGW456L13_281 0.28 +1.5
328,680 - PfGW456L13_281 0.28 +1.0
328,796 + PfGW456L13_281 0.39 -0.7
328,796 + PfGW456L13_281 0.39 +1.6
328,797 - PfGW456L13_281 0.39 +1.3
328,797 - PfGW456L13_281 0.39 +0.8
328,797 - PfGW456L13_281 0.39 +1.8
328,797 - PfGW456L13_281 0.39 -2.1
328,797 - PfGW456L13_281 0.39 -0.8
328,800 + PfGW456L13_281 0.39 -3.1

Or see this region's nucleotide sequence