Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2508

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2506 and PfGW456L13_2507 are separated by 62 nucleotidesPfGW456L13_2507 and PfGW456L13_2508 are separated by 329 nucleotidesPfGW456L13_2508 and PfGW456L13_2509 are separated by 87 nucleotides PfGW456L13_2506 - 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39), at 2,770,787 to 2,771,821 _2506 PfGW456L13_2507 - hypothetical protein, at 2,771,884 to 2,772,051 _2507 PfGW456L13_2508 - ADP compounds hydrolase NudE (EC 3.6.1.-), at 2,772,381 to 2,772,929 _2508 PfGW456L13_2509 - FIG000557: hypothetical protein co-occurring with RecR, at 2,773,017 to 2,774,147 _2509 Position (kb) 2772 2773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2771.555 kb on + strand, within PfGW456L13_2506at 2771.556 kb on - strand, within PfGW456L13_2506at 2771.556 kb on - strand, within PfGW456L13_2506at 2771.655 kb on - strand, within PfGW456L13_2506at 2771.697 kb on - strand, within PfGW456L13_2506at 2771.697 kb on - strand, within PfGW456L13_2506at 2771.697 kb on - strand, within PfGW456L13_2506at 2771.697 kb on - strand, within PfGW456L13_2506at 2771.808 kb on + strandat 2771.808 kb on + strandat 2771.864 kb on - strandat 2771.864 kb on - strandat 2771.937 kb on + strand, within PfGW456L13_2507at 2771.938 kb on - strand, within PfGW456L13_2507at 2771.948 kb on + strand, within PfGW456L13_2507at 2771.948 kb on + strand, within PfGW456L13_2507at 2771.949 kb on - strand, within PfGW456L13_2507at 2771.949 kb on - strand, within PfGW456L13_2507at 2771.967 kb on - strand, within PfGW456L13_2507at 2772.072 kb on + strandat 2772.073 kb on - strandat 2772.073 kb on - strandat 2772.080 kb on + strandat 2772.080 kb on + strandat 2772.080 kb on + strandat 2772.209 kb on + strandat 2772.555 kb on + strand, within PfGW456L13_2508at 2772.556 kb on - strand, within PfGW456L13_2508at 2772.673 kb on + strand, within PfGW456L13_2508at 2772.673 kb on + strand, within PfGW456L13_2508at 2772.673 kb on + strand, within PfGW456L13_2508at 2772.824 kb on - strand, within PfGW456L13_2508at 2772.824 kb on - strand, within PfGW456L13_2508at 2773.545 kb on + strand, within PfGW456L13_2509at 2773.546 kb on - strand, within PfGW456L13_2509at 2773.546 kb on - strand, within PfGW456L13_2509at 2773.546 kb on - strand, within PfGW456L13_2509at 2773.546 kb on - strand, within PfGW456L13_2509at 2773.607 kb on - strand, within PfGW456L13_2509at 2773.607 kb on - strand, within PfGW456L13_2509at 2773.825 kb on + strand, within PfGW456L13_2509at 2773.911 kb on + strand, within PfGW456L13_2509

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,771,555 + PfGW456L13_2506 0.74 +2.7
2,771,556 - PfGW456L13_2506 0.74 +0.9
2,771,556 - PfGW456L13_2506 0.74 +0.7
2,771,655 - PfGW456L13_2506 0.84 +0.7
2,771,697 - PfGW456L13_2506 0.88 +2.9
2,771,697 - PfGW456L13_2506 0.88 +0.5
2,771,697 - PfGW456L13_2506 0.88 -0.1
2,771,697 - PfGW456L13_2506 0.88 +1.3
2,771,808 + +0.9
2,771,808 + -1.6
2,771,864 - +0.6
2,771,864 - -3.1
2,771,937 + PfGW456L13_2507 0.32 +2.2
2,771,938 - PfGW456L13_2507 0.32 -0.7
2,771,948 + PfGW456L13_2507 0.38 -1.3
2,771,948 + PfGW456L13_2507 0.38 +0.3
2,771,949 - PfGW456L13_2507 0.39 -0.1
2,771,949 - PfGW456L13_2507 0.39 +0.7
2,771,967 - PfGW456L13_2507 0.49 -0.2
2,772,072 + -0.5
2,772,073 - -1.7
2,772,073 - -2.8
2,772,080 + -0.2
2,772,080 + +1.3
2,772,080 + +0.7
2,772,209 + +1.3
2,772,555 + PfGW456L13_2508 0.32 +0.3
2,772,556 - PfGW456L13_2508 0.32 +1.8
2,772,673 + PfGW456L13_2508 0.53 +1.3
2,772,673 + PfGW456L13_2508 0.53 +1.3
2,772,673 + PfGW456L13_2508 0.53 -2.1
2,772,824 - PfGW456L13_2508 0.81 +1.6
2,772,824 - PfGW456L13_2508 0.81 +2.8
2,773,545 + PfGW456L13_2509 0.47 +1.8
2,773,546 - PfGW456L13_2509 0.47 -0.9
2,773,546 - PfGW456L13_2509 0.47 +1.2
2,773,546 - PfGW456L13_2509 0.47 +0.5
2,773,546 - PfGW456L13_2509 0.47 +0.8
2,773,607 - PfGW456L13_2509 0.52 -0.4
2,773,607 - PfGW456L13_2509 0.52 -1.4
2,773,825 + PfGW456L13_2509 0.71 +2.8
2,773,911 + PfGW456L13_2509 0.79 +0.3

Or see this region's nucleotide sequence