Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2506 and PfGW456L13_2507 are separated by 62 nucleotides PfGW456L13_2507 and PfGW456L13_2508 are separated by 329 nucleotides PfGW456L13_2508 and PfGW456L13_2509 are separated by 87 nucleotides
PfGW456L13_2506 - 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39), at 2,770,787 to 2,771,821
_2506
PfGW456L13_2507 - hypothetical protein, at 2,771,884 to 2,772,051
_2507
PfGW456L13_2508 - ADP compounds hydrolase NudE (EC 3.6.1.-), at 2,772,381 to 2,772,929
_2508
PfGW456L13_2509 - FIG000557: hypothetical protein co-occurring with RecR, at 2,773,017 to 2,774,147
_2509
Position (kb)
2772
2773 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2771.555 kb on + strand, within PfGW456L13_2506 at 2771.556 kb on - strand, within PfGW456L13_2506 at 2771.556 kb on - strand, within PfGW456L13_2506 at 2771.655 kb on - strand, within PfGW456L13_2506 at 2771.697 kb on - strand, within PfGW456L13_2506 at 2771.697 kb on - strand, within PfGW456L13_2506 at 2771.697 kb on - strand, within PfGW456L13_2506 at 2771.697 kb on - strand, within PfGW456L13_2506 at 2771.808 kb on + strand at 2771.808 kb on + strand at 2771.864 kb on - strand at 2771.864 kb on - strand at 2771.937 kb on + strand, within PfGW456L13_2507 at 2771.938 kb on - strand, within PfGW456L13_2507 at 2771.948 kb on + strand, within PfGW456L13_2507 at 2771.948 kb on + strand, within PfGW456L13_2507 at 2771.949 kb on - strand, within PfGW456L13_2507 at 2771.949 kb on - strand, within PfGW456L13_2507 at 2771.967 kb on - strand, within PfGW456L13_2507 at 2772.072 kb on + strand at 2772.073 kb on - strand at 2772.073 kb on - strand at 2772.080 kb on + strand at 2772.080 kb on + strand at 2772.080 kb on + strand at 2772.209 kb on + strand at 2772.555 kb on + strand, within PfGW456L13_2508 at 2772.556 kb on - strand, within PfGW456L13_2508 at 2772.673 kb on + strand, within PfGW456L13_2508 at 2772.673 kb on + strand, within PfGW456L13_2508 at 2772.673 kb on + strand, within PfGW456L13_2508 at 2772.824 kb on - strand, within PfGW456L13_2508 at 2772.824 kb on - strand, within PfGW456L13_2508 at 2773.545 kb on + strand, within PfGW456L13_2509 at 2773.546 kb on - strand, within PfGW456L13_2509 at 2773.546 kb on - strand, within PfGW456L13_2509 at 2773.546 kb on - strand, within PfGW456L13_2509 at 2773.546 kb on - strand, within PfGW456L13_2509 at 2773.607 kb on - strand, within PfGW456L13_2509 at 2773.607 kb on - strand, within PfGW456L13_2509 at 2773.825 kb on + strand, within PfGW456L13_2509 at 2773.911 kb on + strand, within PfGW456L13_2509
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,771,555 + PfGW456L13_2506 0.74 +2.7 2,771,556 - PfGW456L13_2506 0.74 +0.9 2,771,556 - PfGW456L13_2506 0.74 +0.7 2,771,655 - PfGW456L13_2506 0.84 +0.7 2,771,697 - PfGW456L13_2506 0.88 +2.9 2,771,697 - PfGW456L13_2506 0.88 +0.5 2,771,697 - PfGW456L13_2506 0.88 -0.1 2,771,697 - PfGW456L13_2506 0.88 +1.3 2,771,808 + +0.9 2,771,808 + -1.6 2,771,864 - +0.6 2,771,864 - -3.1 2,771,937 + PfGW456L13_2507 0.32 +2.2 2,771,938 - PfGW456L13_2507 0.32 -0.7 2,771,948 + PfGW456L13_2507 0.38 -1.3 2,771,948 + PfGW456L13_2507 0.38 +0.3 2,771,949 - PfGW456L13_2507 0.39 -0.1 2,771,949 - PfGW456L13_2507 0.39 +0.7 2,771,967 - PfGW456L13_2507 0.49 -0.2 2,772,072 + -0.5 2,772,073 - -1.7 2,772,073 - -2.8 2,772,080 + -0.2 2,772,080 + +1.3 2,772,080 + +0.7 2,772,209 + +1.3 2,772,555 + PfGW456L13_2508 0.32 +0.3 2,772,556 - PfGW456L13_2508 0.32 +1.8 2,772,673 + PfGW456L13_2508 0.53 +1.3 2,772,673 + PfGW456L13_2508 0.53 +1.3 2,772,673 + PfGW456L13_2508 0.53 -2.1 2,772,824 - PfGW456L13_2508 0.81 +1.6 2,772,824 - PfGW456L13_2508 0.81 +2.8 2,773,545 + PfGW456L13_2509 0.47 +1.8 2,773,546 - PfGW456L13_2509 0.47 -0.9 2,773,546 - PfGW456L13_2509 0.47 +1.2 2,773,546 - PfGW456L13_2509 0.47 +0.5 2,773,546 - PfGW456L13_2509 0.47 +0.8 2,773,607 - PfGW456L13_2509 0.52 -0.4 2,773,607 - PfGW456L13_2509 0.52 -1.4 2,773,825 + PfGW456L13_2509 0.71 +2.8 2,773,911 + PfGW456L13_2509 0.79 +0.3
Or see this region's nucleotide sequence