Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2478

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2476 and PfGW456L13_2477 are separated by 20 nucleotidesPfGW456L13_2477 and PfGW456L13_2478 are separated by 144 nucleotidesPfGW456L13_2478 and PfGW456L13_2479 are separated by 148 nucleotides PfGW456L13_2476 - Putative sulfate permease, at 2,745,342 to 2,746,127 _2476 PfGW456L13_2477 - Lactoylglutathione lyase and related lyases, at 2,746,148 to 2,746,552 _2477 PfGW456L13_2478 - FIG00956937: hypothetical protein, at 2,746,697 to 2,747,248 _2478 PfGW456L13_2479 - Beta-lactamase (EC 3.5.2.6), at 2,747,397 to 2,748,536 _2479 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2745.756 kb on + strand, within PfGW456L13_2476at 2745.756 kb on + strand, within PfGW456L13_2476at 2745.756 kb on + strand, within PfGW456L13_2476at 2745.757 kb on - strand, within PfGW456L13_2476at 2745.757 kb on - strand, within PfGW456L13_2476at 2745.757 kb on - strand, within PfGW456L13_2476at 2745.757 kb on - strand, within PfGW456L13_2476at 2746.000 kb on - strand, within PfGW456L13_2476at 2746.030 kb on - strand, within PfGW456L13_2476at 2746.030 kb on - strand, within PfGW456L13_2476at 2746.111 kb on - strandat 2746.197 kb on + strand, within PfGW456L13_2477at 2746.197 kb on + strand, within PfGW456L13_2477at 2746.197 kb on + strand, within PfGW456L13_2477at 2746.198 kb on - strand, within PfGW456L13_2477at 2746.219 kb on - strand, within PfGW456L13_2477at 2746.333 kb on - strand, within PfGW456L13_2477at 2746.333 kb on - strand, within PfGW456L13_2477at 2746.366 kb on - strand, within PfGW456L13_2477at 2746.380 kb on - strand, within PfGW456L13_2477at 2746.380 kb on - strand, within PfGW456L13_2477at 2746.510 kb on + strand, within PfGW456L13_2477at 2746.510 kb on + strand, within PfGW456L13_2477at 2746.511 kb on - strand, within PfGW456L13_2477at 2746.566 kb on - strandat 2746.599 kb on + strandat 2746.599 kb on + strandat 2746.600 kb on - strandat 2746.600 kb on - strandat 2746.600 kb on - strandat 2746.600 kb on - strandat 2746.622 kb on + strandat 2746.623 kb on - strandat 2746.623 kb on - strandat 2746.631 kb on + strandat 2746.631 kb on + strandat 2746.632 kb on - strandat 2746.632 kb on - strandat 2746.724 kb on - strandat 2746.724 kb on - strandat 2746.913 kb on + strand, within PfGW456L13_2478at 2746.914 kb on - strand, within PfGW456L13_2478at 2746.914 kb on - strand, within PfGW456L13_2478at 2746.921 kb on - strand, within PfGW456L13_2478at 2747.132 kb on - strand, within PfGW456L13_2478at 2747.321 kb on + strandat 2747.321 kb on + strandat 2747.322 kb on - strandat 2747.322 kb on - strandat 2747.399 kb on - strandat 2747.418 kb on + strandat 2747.418 kb on + strandat 2747.503 kb on + strandat 2747.503 kb on + strandat 2747.503 kb on + strandat 2747.504 kb on - strandat 2747.504 kb on - strandat 2747.504 kb on - strandat 2747.504 kb on - strandat 2747.504 kb on - strandat 2747.512 kb on + strandat 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strandat 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.512 kb on + strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.513 kb on - strand, within PfGW456L13_2479at 2747.665 kb on + strand, within PfGW456L13_2479at 2747.665 kb on + strand, within PfGW456L13_2479at 2747.665 kb on + strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.666 kb on - strand, within PfGW456L13_2479at 2747.694 kb on - strand, within PfGW456L13_2479at 2747.701 kb on - strand, within PfGW456L13_2479at 2747.707 kb on + strand, within PfGW456L13_2479at 2747.707 kb on + strand, within PfGW456L13_2479at 2747.707 kb on + strand, within PfGW456L13_2479at 2747.708 kb on - strand, within PfGW456L13_2479at 2747.708 kb on - strand, within PfGW456L13_2479at 2747.708 kb on - strand, within PfGW456L13_2479at 2747.708 kb on - strand, within PfGW456L13_2479at 2747.708 kb on - strand, within PfGW456L13_2479at 2747.708 kb on - strand, within PfGW456L13_2479at 2747.710 kb on + strand, within PfGW456L13_2479at 2747.785 kb on + strand, within PfGW456L13_2479at 2747.785 kb on + strand, within PfGW456L13_2479at 2747.785 kb on + strand, within PfGW456L13_2479at 2747.785 kb on + strand, within PfGW456L13_2479at 2747.786 kb on - strand, within PfGW456L13_2479at 2747.786 kb on - strand, within PfGW456L13_2479at 2747.786 kb on - strand, within PfGW456L13_2479at 2747.786 kb on - strand, within PfGW456L13_2479at 2747.786 kb on - strand, within PfGW456L13_2479at 2747.786 kb on - strand, within PfGW456L13_2479at 2747.821 kb on + strand, within PfGW456L13_2479at 2747.822 kb on - strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.923 kb on + strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2747.924 kb on - strand, within PfGW456L13_2479at 2748.037 kb on + strand, within PfGW456L13_2479at 2748.037 kb on + strand, within PfGW456L13_2479at 2748.038 kb on - strand, within PfGW456L13_2479at 2748.062 kb on - strand, within PfGW456L13_2479at 2748.082 kb on + strand, within PfGW456L13_2479at 2748.082 kb on + strand, within PfGW456L13_2479at 2748.082 kb on + strand, within PfGW456L13_2479at 2748.082 kb on + strand, within PfGW456L13_2479at 2748.082 kb on + strand, within PfGW456L13_2479at 2748.082 kb on + strand, within PfGW456L13_2479at 2748.083 kb on - strand, within PfGW456L13_2479at 2748.083 kb on - strand, within PfGW456L13_2479

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,745,756 + PfGW456L13_2476 0.53 +2.2
2,745,756 + PfGW456L13_2476 0.53 +0.5
2,745,756 + PfGW456L13_2476 0.53 +2.5
2,745,757 - PfGW456L13_2476 0.53 +1.5
2,745,757 - PfGW456L13_2476 0.53 -0.2
2,745,757 - PfGW456L13_2476 0.53 -2.7
2,745,757 - PfGW456L13_2476 0.53 -1.4
2,746,000 - PfGW456L13_2476 0.84 +1.7
2,746,030 - PfGW456L13_2476 0.88 -2.2
2,746,030 - PfGW456L13_2476 0.88 -1.0
2,746,111 - -2.5
2,746,197 + PfGW456L13_2477 0.12 -2.1
2,746,197 + PfGW456L13_2477 0.12 +0.1
2,746,197 + PfGW456L13_2477 0.12 -2.0
2,746,198 - PfGW456L13_2477 0.12 +0.8
2,746,219 - PfGW456L13_2477 0.18 -1.8
2,746,333 - PfGW456L13_2477 0.46 -2.2
2,746,333 - PfGW456L13_2477 0.46 +0.2
2,746,366 - PfGW456L13_2477 0.54 -2.0
2,746,380 - PfGW456L13_2477 0.57 -1.3
2,746,380 - PfGW456L13_2477 0.57 -2.1
2,746,510 + PfGW456L13_2477 0.89 +1.4
2,746,510 + PfGW456L13_2477 0.89 -2.6
2,746,511 - PfGW456L13_2477 0.90 -1.2
2,746,566 - -2.4
2,746,599 + +1.8
2,746,599 + -1.5
2,746,600 - +2.1
2,746,600 - +1.9
2,746,600 - -2.8
2,746,600 - +0.9
2,746,622 + +0.9
2,746,623 - -2.9
2,746,623 - +2.6
2,746,631 + -1.0
2,746,631 + +0.4
2,746,632 - -0.9
2,746,632 - -0.0
2,746,724 - -0.9
2,746,724 - -3.4
2,746,913 + PfGW456L13_2478 0.39 -0.7
2,746,914 - PfGW456L13_2478 0.39 -0.7
2,746,914 - PfGW456L13_2478 0.39 -3.4
2,746,921 - PfGW456L13_2478 0.41 -0.4
2,747,132 - PfGW456L13_2478 0.79 -1.7
2,747,321 + +1.2
2,747,321 + -0.5
2,747,322 - +0.1
2,747,322 - +1.3
2,747,399 - +0.7
2,747,418 + -1.8
2,747,418 + -1.1
2,747,503 + +1.5
2,747,503 + -0.3
2,747,503 + -2.8
2,747,504 - +0.9
2,747,504 - -0.1
2,747,504 - -1.5
2,747,504 - -3.7
2,747,504 - +1.1
2,747,512 + +3.7
2,747,512 + PfGW456L13_2479 0.10 -1.7
2,747,512 + PfGW456L13_2479 0.10 -3.3
2,747,512 + PfGW456L13_2479 0.10 -1.1
2,747,512 + PfGW456L13_2479 0.10 -2.1
2,747,512 + PfGW456L13_2479 0.10 +1.0
2,747,512 + +4.5
2,747,512 + PfGW456L13_2479 0.10 +1.2
2,747,512 + PfGW456L13_2479 0.10 +0.3
2,747,512 + PfGW456L13_2479 0.10 +1.3
2,747,512 + PfGW456L13_2479 0.10 -0.8
2,747,512 + PfGW456L13_2479 0.10 -1.6
2,747,512 + PfGW456L13_2479 0.10 -2.9
2,747,512 + PfGW456L13_2479 0.10 -1.4
2,747,512 + PfGW456L13_2479 0.10 -0.1
2,747,512 + PfGW456L13_2479 0.10 -0.1
2,747,512 + PfGW456L13_2479 0.10 -0.9
2,747,513 - PfGW456L13_2479 0.10 -0.5
2,747,513 - PfGW456L13_2479 0.10 +0.5
2,747,513 - PfGW456L13_2479 0.10 -0.1
2,747,513 - PfGW456L13_2479 0.10 +0.8
2,747,513 - PfGW456L13_2479 0.10 +1.9
2,747,513 - PfGW456L13_2479 0.10 +2.1
2,747,513 - PfGW456L13_2479 0.10 -0.3
2,747,513 - PfGW456L13_2479 0.10 +1.9
2,747,513 - PfGW456L13_2479 0.10 +0.9
2,747,513 - PfGW456L13_2479 0.10 -0.7
2,747,513 - PfGW456L13_2479 0.10 -0.6
2,747,513 - PfGW456L13_2479 0.10 -1.3
2,747,513 - PfGW456L13_2479 0.10 -2.0
2,747,513 - PfGW456L13_2479 0.10 -0.5
2,747,513 - PfGW456L13_2479 0.10 +1.8
2,747,513 - PfGW456L13_2479 0.10 -1.5
2,747,513 - PfGW456L13_2479 0.10 -2.6
2,747,665 + PfGW456L13_2479 0.24 -0.3
2,747,665 + PfGW456L13_2479 0.24 -2.4
2,747,665 + PfGW456L13_2479 0.24 +0.9
2,747,666 - PfGW456L13_2479 0.24 +0.3
2,747,666 - PfGW456L13_2479 0.24 +1.7
2,747,666 - PfGW456L13_2479 0.24 -0.1
2,747,666 - PfGW456L13_2479 0.24 -0.7
2,747,666 - PfGW456L13_2479 0.24 +0.7
2,747,666 - PfGW456L13_2479 0.24 +1.0
2,747,666 - PfGW456L13_2479 0.24 -0.4
2,747,666 - PfGW456L13_2479 0.24 +1.7
2,747,666 - PfGW456L13_2479 0.24 +0.3
2,747,694 - PfGW456L13_2479 0.26 -0.7
2,747,701 - PfGW456L13_2479 0.27 -0.3
2,747,707 + PfGW456L13_2479 0.27 -3.2
2,747,707 + PfGW456L13_2479 0.27 -2.3
2,747,707 + PfGW456L13_2479 0.27 +0.0
2,747,708 - PfGW456L13_2479 0.27 +2.1
2,747,708 - PfGW456L13_2479 0.27 -3.5
2,747,708 - PfGW456L13_2479 0.27 -0.0
2,747,708 - PfGW456L13_2479 0.27 -2.8
2,747,708 - PfGW456L13_2479 0.27 -3.0
2,747,708 - PfGW456L13_2479 0.27 -1.3
2,747,710 + PfGW456L13_2479 0.27 +0.2
2,747,785 + PfGW456L13_2479 0.34 -1.5
2,747,785 + PfGW456L13_2479 0.34 -0.3
2,747,785 + PfGW456L13_2479 0.34 +1.7
2,747,785 + PfGW456L13_2479 0.34 +1.8
2,747,786 - PfGW456L13_2479 0.34 -2.3
2,747,786 - PfGW456L13_2479 0.34 -0.1
2,747,786 - PfGW456L13_2479 0.34 -0.9
2,747,786 - PfGW456L13_2479 0.34 -3.1
2,747,786 - PfGW456L13_2479 0.34 +1.5
2,747,786 - PfGW456L13_2479 0.34 +0.9
2,747,821 + PfGW456L13_2479 0.37 -0.2
2,747,822 - PfGW456L13_2479 0.37 -2.8
2,747,923 + PfGW456L13_2479 0.46 -3.2
2,747,923 + PfGW456L13_2479 0.46 +1.8
2,747,923 + PfGW456L13_2479 0.46 +1.7
2,747,923 + PfGW456L13_2479 0.46 -4.0
2,747,923 + PfGW456L13_2479 0.46 -0.5
2,747,923 + PfGW456L13_2479 0.46 +0.5
2,747,923 + PfGW456L13_2479 0.46 -2.6
2,747,923 + PfGW456L13_2479 0.46 +0.6
2,747,923 + PfGW456L13_2479 0.46 -1.8
2,747,923 + PfGW456L13_2479 0.46 +2.2
2,747,923 + PfGW456L13_2479 0.46 -0.4
2,747,923 + PfGW456L13_2479 0.46 +0.7
2,747,923 + PfGW456L13_2479 0.46 +0.0
2,747,923 + PfGW456L13_2479 0.46 -2.1
2,747,923 + PfGW456L13_2479 0.46 -1.8
2,747,923 + PfGW456L13_2479 0.46 +2.7
2,747,924 - PfGW456L13_2479 0.46 +2.2
2,747,924 - PfGW456L13_2479 0.46 +0.9
2,747,924 - PfGW456L13_2479 0.46 -1.5
2,747,924 - PfGW456L13_2479 0.46 -0.3
2,747,924 - PfGW456L13_2479 0.46 +2.8
2,747,924 - PfGW456L13_2479 0.46 +3.4
2,747,924 - PfGW456L13_2479 0.46 -2.8
2,747,924 - PfGW456L13_2479 0.46 +1.9
2,747,924 - PfGW456L13_2479 0.46 -0.7
2,747,924 - PfGW456L13_2479 0.46 -2.5
2,747,924 - PfGW456L13_2479 0.46 +0.8
2,747,924 - PfGW456L13_2479 0.46 +1.8
2,747,924 - PfGW456L13_2479 0.46 -1.1
2,747,924 - PfGW456L13_2479 0.46 +0.5
2,747,924 - PfGW456L13_2479 0.46 +0.4
2,747,924 - PfGW456L13_2479 0.46 -2.6
2,747,924 - PfGW456L13_2479 0.46 -3.6
2,747,924 - PfGW456L13_2479 0.46 +2.0
2,747,924 - PfGW456L13_2479 0.46 -0.4
2,747,924 - PfGW456L13_2479 0.46 +0.4
2,747,924 - PfGW456L13_2479 0.46 -2.5
2,748,037 + PfGW456L13_2479 0.56 -0.2
2,748,037 + PfGW456L13_2479 0.56 -0.8
2,748,038 - PfGW456L13_2479 0.56 -1.6
2,748,062 - PfGW456L13_2479 0.58 -0.9
2,748,082 + PfGW456L13_2479 0.60 +1.5
2,748,082 + PfGW456L13_2479 0.60 -0.9
2,748,082 + PfGW456L13_2479 0.60 -0.0
2,748,082 + PfGW456L13_2479 0.60 +1.8
2,748,082 + PfGW456L13_2479 0.60 -0.1
2,748,082 + PfGW456L13_2479 0.60 +0.9
2,748,083 - PfGW456L13_2479 0.60 +0.9
2,748,083 - PfGW456L13_2479 0.60 -2.1

Or see this region's nucleotide sequence