Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_226 and PfGW456L13_227 overlap by 4 nucleotides PfGW456L13_227 and PfGW456L13_228 are separated by 401 nucleotides PfGW456L13_228 and PfGW456L13_229 are separated by 180 nucleotides
PfGW456L13_226 - FIG00959437: hypothetical protein, at 268,673 to 268,975
_226
PfGW456L13_227 - FIG00958420: hypothetical protein, at 268,972 to 269,202
_227
PfGW456L13_228 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 269,604 to 271,214
_228
PfGW456L13_229 - Na(+)/H(+) antiporter, at 271,395 to 273,137
_229
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 268.833 kb on + strand, within PfGW456L13_226 at 268.834 kb on - strand, within PfGW456L13_226 at 268.924 kb on - strand, within PfGW456L13_226 at 268.968 kb on + strand at 268.968 kb on + strand at 268.969 kb on - strand at 269.235 kb on - strand at 269.268 kb on + strand at 269.269 kb on - strand at 269.270 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.322 kb on - strand at 269.322 kb on - strand at 269.322 kb on - strand at 269.322 kb on - strand at 269.333 kb on + strand at 269.368 kb on + strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.466 kb on + strand at 269.466 kb on + strand at 269.466 kb on + strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.473 kb on + strand at 269.474 kb on - strand at 269.491 kb on - strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.600 kb on + strand at 269.600 kb on + strand at 269.600 kb on + strand at 269.600 kb on + strand at 269.601 kb on + strand at 269.601 kb on - strand at 269.601 kb on - strand at 269.603 kb on + strand at 269.604 kb on - strand at 269.892 kb on + strand, within PfGW456L13_228 at 269.892 kb on + strand, within PfGW456L13_228 at 269.892 kb on + strand, within PfGW456L13_228 at 269.893 kb on - strand, within PfGW456L13_228 at 269.931 kb on + strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 270.141 kb on + strand, within PfGW456L13_228 at 270.142 kb on - strand, within PfGW456L13_228 at 270.163 kb on + strand, within PfGW456L13_228 at 270.709 kb on + strand, within PfGW456L13_228 at 270.709 kb on + strand, within PfGW456L13_228 at 270.709 kb on + strand, within PfGW456L13_228 at 270.709 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.826 kb on + strand, within PfGW456L13_228 at 270.827 kb on - strand, within PfGW456L13_228 at 270.827 kb on - strand, within PfGW456L13_228 at 270.827 kb on - strand, within PfGW456L13_228 at 271.327 kb on + strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.444 kb on + strand at 271.444 kb on + strand at 271.559 kb on + strand at 271.560 kb on - strand at 271.563 kb on + strand at 271.563 kb on + strand at 271.563 kb on + strand at 271.563 kb on + strand at 271.575 kb on + strand, within PfGW456L13_229 at 271.575 kb on + strand, within PfGW456L13_229 at 271.576 kb on - strand, within PfGW456L13_229 at 271.697 kb on + strand, within PfGW456L13_229 at 271.697 kb on + strand, within PfGW456L13_229 at 271.697 kb on + strand, within PfGW456L13_229 at 271.785 kb on - strand, within PfGW456L13_229 at 272.058 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.139 kb on + strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229 at 272.140 kb on - strand, within PfGW456L13_229
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 268,833 + PfGW456L13_226 0.53 +1.0 268,834 - PfGW456L13_226 0.53 -2.2 268,924 - PfGW456L13_226 0.83 -0.1 268,968 + +1.4 268,968 + +0.9 268,969 - +1.4 269,235 - +0.3 269,268 + +0.1 269,269 - +1.6 269,270 + +0.3 269,321 + +0.4 269,321 + -0.1 269,321 + +2.1 269,321 + +0.3 269,321 + -2.7 269,321 + +0.8 269,322 - -1.2 269,322 - +0.4 269,322 - -2.1 269,322 - -2.8 269,333 + +0.1 269,368 + -2.4 269,369 - +1.3 269,369 - +0.2 269,369 - -0.6 269,369 - -0.8 269,369 - +1.5 269,369 - -1.0 269,372 + -2.0 269,372 + -2.3 269,372 + -2.6 269,372 + -0.0 269,372 + +1.7 269,372 + +0.1 269,373 - -0.6 269,373 - +4.0 269,373 - -1.8 269,373 - -2.4 269,373 - +0.8 269,373 - -0.8 269,466 + +2.5 269,466 + -0.1 269,466 + -0.6 269,467 - -2.4 269,467 - +0.7 269,467 - -3.5 269,467 - +0.1 269,467 - -2.9 269,473 + -1.1 269,474 - -3.9 269,491 - +1.2 269,542 + -0.2 269,542 + -2.7 269,542 + -1.0 269,542 + -2.0 269,542 + -3.4 269,543 - -0.0 269,543 - +1.1 269,543 - -2.3 269,543 - -1.8 269,543 - +1.1 269,543 - -1.0 269,543 - -3.5 269,543 - -2.1 269,543 - -1.5 269,543 - -1.2 269,543 - +0.1 269,543 - +1.7 269,600 + -1.9 269,600 + -1.2 269,600 + -0.9 269,600 + +1.0 269,601 + -0.1 269,601 - -0.8 269,601 - +1.9 269,603 + -0.8 269,604 - +1.0 269,892 + PfGW456L13_228 0.18 -0.8 269,892 + PfGW456L13_228 0.18 +4.4 269,892 + PfGW456L13_228 0.18 +1.7 269,893 - PfGW456L13_228 0.18 +0.5 269,931 + PfGW456L13_228 0.20 +2.1 269,932 - PfGW456L13_228 0.20 +1.7 269,932 - PfGW456L13_228 0.20 +0.4 269,932 - PfGW456L13_228 0.20 -0.3 269,932 - PfGW456L13_228 0.20 -1.9 269,940 + PfGW456L13_228 0.21 -1.0 269,940 + PfGW456L13_228 0.21 -1.6 269,940 + PfGW456L13_228 0.21 -0.6 269,940 + PfGW456L13_228 0.21 +1.0 269,941 - PfGW456L13_228 0.21 +0.2 269,941 - PfGW456L13_228 0.21 +1.7 269,941 - PfGW456L13_228 0.21 -0.9 269,941 - PfGW456L13_228 0.21 +2.3 269,941 - PfGW456L13_228 0.21 +1.1 269,941 - PfGW456L13_228 0.21 -1.8 269,941 - PfGW456L13_228 0.21 +1.1 269,941 - PfGW456L13_228 0.21 -0.0 269,941 - PfGW456L13_228 0.21 +1.0 269,941 - PfGW456L13_228 0.21 -3.7 269,941 - PfGW456L13_228 0.21 -0.4 269,944 + PfGW456L13_228 0.21 -3.9 269,944 + PfGW456L13_228 0.21 +2.0 269,944 + PfGW456L13_228 0.21 +0.5 269,944 + PfGW456L13_228 0.21 +1.7 269,945 - PfGW456L13_228 0.21 +1.3 269,945 - PfGW456L13_228 0.21 -0.9 269,945 - PfGW456L13_228 0.21 +0.2 269,945 - PfGW456L13_228 0.21 -1.2 270,141 + PfGW456L13_228 0.33 -0.6 270,142 - PfGW456L13_228 0.33 +1.7 270,163 + PfGW456L13_228 0.35 -1.6 270,709 + PfGW456L13_228 0.69 -1.1 270,709 + PfGW456L13_228 0.69 -1.0 270,709 + PfGW456L13_228 0.69 -2.2 270,709 + PfGW456L13_228 0.69 +0.4 270,826 + PfGW456L13_228 0.76 -2.1 270,826 + PfGW456L13_228 0.76 -1.4 270,826 + PfGW456L13_228 0.76 -0.2 270,826 + PfGW456L13_228 0.76 +0.7 270,826 + PfGW456L13_228 0.76 +3.0 270,826 + PfGW456L13_228 0.76 -1.5 270,826 + PfGW456L13_228 0.76 -1.4 270,826 + PfGW456L13_228 0.76 +0.7 270,827 - PfGW456L13_228 0.76 -0.8 270,827 - PfGW456L13_228 0.76 +1.4 270,827 - PfGW456L13_228 0.76 +0.5 271,327 + -2.5 271,327 + +0.0 271,327 + +1.9 271,328 - -2.4 271,328 - +1.5 271,328 - +0.3 271,328 - +2.2 271,328 - -2.6 271,328 - +1.2 271,444 + -1.4 271,444 + +2.1 271,559 + +1.4 271,560 - -1.8 271,563 + +1.4 271,563 + +2.5 271,563 + -1.6 271,563 + +0.8 271,575 + PfGW456L13_229 0.10 -0.9 271,575 + PfGW456L13_229 0.10 -0.8 271,576 - PfGW456L13_229 0.10 -0.3 271,697 + PfGW456L13_229 0.17 +0.8 271,697 + PfGW456L13_229 0.17 -1.0 271,697 + PfGW456L13_229 0.17 +0.0 271,785 - PfGW456L13_229 0.22 +0.6 272,058 + PfGW456L13_229 0.38 -0.6 272,139 + PfGW456L13_229 0.43 -1.1 272,139 + -0.5 272,139 + PfGW456L13_229 0.43 -2.4 272,139 + PfGW456L13_229 0.43 -0.9 272,139 + PfGW456L13_229 0.43 -0.2 272,139 + PfGW456L13_229 0.43 -1.5 272,139 + PfGW456L13_229 0.43 -1.4 272,139 + PfGW456L13_229 0.43 -0.7 272,139 + PfGW456L13_229 0.43 -2.6 272,139 + PfGW456L13_229 0.43 +0.9 272,139 + PfGW456L13_229 0.43 +1.4 272,139 + PfGW456L13_229 0.43 +1.7 272,140 - PfGW456L13_229 0.43 -0.3 272,140 - PfGW456L13_229 0.43 -1.0 272,140 - PfGW456L13_229 0.43 -1.0 272,140 - PfGW456L13_229 0.43 -2.9 272,140 - PfGW456L13_229 0.43 +1.7 272,140 - PfGW456L13_229 0.43 -2.2 272,140 - PfGW456L13_229 0.43 +0.1 272,140 - PfGW456L13_229 0.43 -2.0 272,140 - PfGW456L13_229 0.43 +1.9 272,140 - PfGW456L13_229 0.43 +0.5 272,140 - PfGW456L13_229 0.43 -0.6 272,140 - PfGW456L13_229 0.43 +2.6 272,140 - PfGW456L13_229 0.43 -3.3 272,140 - PfGW456L13_229 0.43 -3.8
Or see this region's nucleotide sequence