Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_200

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_198 and PfGW456L13_199 are separated by 66 nucleotidesPfGW456L13_199 and PfGW456L13_200 overlap by 4 nucleotidesPfGW456L13_200 and PfGW456L13_201 overlap by 4 nucleotides PfGW456L13_198 - acyltransferase family protein, at 226,820 to 228,043 _198 PfGW456L13_199 - alpha-1,3-rhamnosyltransferase, at 228,110 to 228,994 _199 PfGW456L13_200 - Glycosyl transferase in large core OS assembly cluster, at 228,991 to 230,145 _200 PfGW456L13_201 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 230,142 to 231,623 _201 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 228.135 kb on + strandat 228.135 kb on + strandat 228.135 kb on + strandat 228.135 kb on + strandat 228.136 kb on - strandat 228.136 kb on - strandat 228.136 kb on - strandat 228.136 kb on - strandat 228.261 kb on + strand, within PfGW456L13_199at 228.262 kb on - strand, within PfGW456L13_199at 228.276 kb on + strand, within PfGW456L13_199at 228.277 kb on - strand, within PfGW456L13_199at 228.277 kb on - strand, within PfGW456L13_199at 228.303 kb on + strand, within PfGW456L13_199at 228.303 kb on + strand, within PfGW456L13_199at 228.304 kb on - strand, within PfGW456L13_199at 228.345 kb on + strand, within PfGW456L13_199at 228.346 kb on - strand, within PfGW456L13_199at 228.346 kb on - strand, within PfGW456L13_199at 228.405 kb on + strand, within PfGW456L13_199at 228.406 kb on - strand, within PfGW456L13_199at 228.406 kb on - strand, within PfGW456L13_199at 228.406 kb on - strand, within PfGW456L13_199at 228.509 kb on - strand, within PfGW456L13_199at 228.897 kb on + strand, within PfGW456L13_199at 228.898 kb on - strand, within PfGW456L13_199at 228.898 kb on - strand, within PfGW456L13_199at 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.937 kb on - strandat 228.937 kb on - strandat 228.937 kb on - strandat 228.937 kb on - strandat 228.951 kb on + strandat 228.952 kb on - strandat 229.044 kb on - strandat 229.044 kb on - strandat 229.085 kb on + strandat 229.139 kb on + strand, within PfGW456L13_200at 229.139 kb on + strand, within PfGW456L13_200at 229.139 kb on + strand, within PfGW456L13_200at 229.139 kb on + strand, within PfGW456L13_200at 229.139 kb on + strand, within PfGW456L13_200at 229.139 kb on + strand, within PfGW456L13_200at 229.140 kb on - strand, within PfGW456L13_200at 229.140 kb on - strand, within PfGW456L13_200at 229.140 kb on - strand, within PfGW456L13_200at 229.140 kb on - strand, within PfGW456L13_200at 229.140 kb on - strand, within PfGW456L13_200at 229.140 kb on - strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.335 kb on - strand, within PfGW456L13_200at 229.461 kb on - strand, within PfGW456L13_200at 229.461 kb on - strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.500 kb on + strand, within PfGW456L13_200at 229.500 kb on + strand, within PfGW456L13_200at 229.501 kb on - strand, within PfGW456L13_200at 229.501 kb on - strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.757 kb on + strand, within PfGW456L13_200at 229.769 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.962 kb on - strand, within PfGW456L13_200at 230.106 kb on - strandat 230.106 kb on - strandat 230.106 kb on - strandat 230.106 kb on - strandat 230.145 kb on + strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.242 kb on + strandat 230.242 kb on + strandat 230.277 kb on + strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.387 kb on - strand, within PfGW456L13_201at 230.808 kb on + strand, within PfGW456L13_201at 230.809 kb on - strand, within PfGW456L13_201at 230.827 kb on - strand, within PfGW456L13_201at 230.983 kb on + strand, within PfGW456L13_201at 230.993 kb on - strand, within PfGW456L13_201

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
228,135 + +2.6
228,135 + -1.0
228,135 + -1.5
228,135 + -0.9
228,136 - +2.0
228,136 - -2.2
228,136 - +2.7
228,136 - +1.1
228,261 + PfGW456L13_199 0.17 +8.2
228,262 - PfGW456L13_199 0.17 +7.0
228,276 + PfGW456L13_199 0.19 +8.0
228,277 - PfGW456L13_199 0.19 +7.8
228,277 - PfGW456L13_199 0.19 +8.9
228,303 + PfGW456L13_199 0.22 +8.3
228,303 + PfGW456L13_199 0.22 +7.7
228,304 - PfGW456L13_199 0.22 +8.3
228,345 + PfGW456L13_199 0.27 +7.0
228,346 - PfGW456L13_199 0.27 +8.9
228,346 - PfGW456L13_199 0.27 +8.4
228,405 + PfGW456L13_199 0.33 +8.2
228,406 - PfGW456L13_199 0.33 +8.2
228,406 - PfGW456L13_199 0.33 +8.0
228,406 - PfGW456L13_199 0.33 +7.9
228,509 - PfGW456L13_199 0.45 +7.9
228,897 + PfGW456L13_199 0.89 +8.5
228,898 - PfGW456L13_199 0.89 +8.3
228,898 - PfGW456L13_199 0.89 +6.9
228,936 + +8.1
228,936 + +8.6
228,936 + +7.6
228,936 + +8.5
228,936 + +7.8
228,936 + +7.8
228,936 + +7.8
228,936 + +8.4
228,936 + +8.0
228,937 - +8.3
228,937 - +9.2
228,937 - +8.7
228,937 - +8.4
228,951 + +8.9
228,952 - +8.8
229,044 - +7.8
229,044 - +8.4
229,085 + +8.7
229,139 + PfGW456L13_200 0.13 +8.0
229,139 + PfGW456L13_200 0.13 +8.5
229,139 + PfGW456L13_200 0.13 +8.6
229,139 + PfGW456L13_200 0.13 +7.7
229,139 + PfGW456L13_200 0.13 +8.3
229,139 + PfGW456L13_200 0.13 +8.5
229,140 - PfGW456L13_200 0.13 +8.5
229,140 - PfGW456L13_200 0.13 +8.7
229,140 - PfGW456L13_200 0.13 +7.3
229,140 - PfGW456L13_200 0.13 +8.7
229,140 - PfGW456L13_200 0.13 +8.6
229,140 - PfGW456L13_200 0.13 +8.1
229,334 + PfGW456L13_200 0.30 +8.0
229,334 + PfGW456L13_200 0.30 +7.5
229,334 + PfGW456L13_200 0.30 +8.1
229,334 + PfGW456L13_200 0.30 +7.7
229,335 - PfGW456L13_200 0.30 +8.1
229,461 - PfGW456L13_200 0.41 +6.8
229,461 - PfGW456L13_200 0.41 +8.2
229,496 + PfGW456L13_200 0.44 +8.0
229,496 + PfGW456L13_200 0.44 +8.1
229,496 + PfGW456L13_200 0.44 +8.7
229,496 + PfGW456L13_200 0.44 +8.1
229,496 + PfGW456L13_200 0.44 +8.0
229,496 + PfGW456L13_200 0.44 +8.4
229,497 - PfGW456L13_200 0.44 +6.7
229,497 - PfGW456L13_200 0.44 +6.7
229,497 - PfGW456L13_200 0.44 +7.6
229,497 - PfGW456L13_200 0.44 +7.1
229,497 - PfGW456L13_200 0.44 +8.2
229,497 - PfGW456L13_200 0.44 +7.7
229,497 - PfGW456L13_200 0.44 +7.3
229,497 - PfGW456L13_200 0.44 +7.4
229,497 - PfGW456L13_200 0.44 +8.2
229,497 - PfGW456L13_200 0.44 +8.4
229,497 - PfGW456L13_200 0.44 +8.3
229,497 - PfGW456L13_200 0.44 +8.6
229,500 + PfGW456L13_200 0.44 +8.2
229,500 + PfGW456L13_200 0.44 +8.9
229,501 - PfGW456L13_200 0.44 +7.8
229,501 - PfGW456L13_200 0.44 +8.1
229,640 + PfGW456L13_200 0.56 +6.8
229,640 + PfGW456L13_200 0.56 +8.2
229,640 + PfGW456L13_200 0.56 +8.3
229,640 + PfGW456L13_200 0.56 +7.8
229,640 + PfGW456L13_200 0.56 +7.4
229,641 - PfGW456L13_200 0.56 +8.1
229,641 - PfGW456L13_200 0.56 +8.5
229,641 - PfGW456L13_200 0.56 +7.8
229,641 - PfGW456L13_200 0.56 +7.7
229,641 - PfGW456L13_200 0.56 +8.4
229,641 - PfGW456L13_200 0.56 +7.2
229,641 - PfGW456L13_200 0.56 +7.9
229,641 - PfGW456L13_200 0.56 +7.9
229,641 - PfGW456L13_200 0.56 +8.0
229,644 + PfGW456L13_200 0.57 +7.7
229,644 + PfGW456L13_200 0.57 +8.6
229,644 + PfGW456L13_200 0.57 +7.6
229,645 - PfGW456L13_200 0.57 +8.6
229,645 - PfGW456L13_200 0.57 +8.6
229,645 - PfGW456L13_200 0.57 +8.3
229,645 - PfGW456L13_200 0.57 +8.8
229,645 - PfGW456L13_200 0.57 +8.8
229,645 - PfGW456L13_200 0.57 +7.6
229,682 + PfGW456L13_200 0.60 +7.6
229,682 + PfGW456L13_200 0.60 +8.2
229,682 + PfGW456L13_200 0.60 +8.1
229,682 + PfGW456L13_200 0.60 +8.0
229,683 - PfGW456L13_200 0.60 +7.8
229,683 - PfGW456L13_200 0.60 +8.5
229,683 - PfGW456L13_200 0.60 +8.4
229,683 - PfGW456L13_200 0.60 +8.0
229,683 - PfGW456L13_200 0.60 +6.6
229,757 + PfGW456L13_200 0.66 +8.8
229,769 + PfGW456L13_200 0.67 +8.3
229,870 + PfGW456L13_200 0.76 +8.1
229,870 + PfGW456L13_200 0.76 +8.1
229,870 + PfGW456L13_200 0.76 +8.4
229,870 + PfGW456L13_200 0.76 +8.5
229,870 + PfGW456L13_200 0.76 +8.8
229,870 + PfGW456L13_200 0.76 +7.7
229,870 + PfGW456L13_200 0.76 +8.1
229,871 - PfGW456L13_200 0.76 +7.7
229,871 - PfGW456L13_200 0.76 +8.9
229,871 - PfGW456L13_200 0.76 +8.1
229,901 + PfGW456L13_200 0.79 +8.1
229,901 + PfGW456L13_200 0.79 +8.4
229,901 + PfGW456L13_200 0.79 +7.9
229,902 - PfGW456L13_200 0.79 +7.8
229,902 - PfGW456L13_200 0.79 +8.3
229,902 - PfGW456L13_200 0.79 +8.2
229,902 - PfGW456L13_200 0.79 +7.2
229,902 - PfGW456L13_200 0.79 +8.7
229,902 - PfGW456L13_200 0.79 +8.1
229,962 - PfGW456L13_200 0.84 +7.6
230,106 - +8.5
230,106 - +8.0
230,106 - +7.4
230,106 - +8.1
230,145 + +5.0
230,146 - +1.4
230,146 - +0.9
230,146 - +0.1
230,146 - -0.2
230,146 - -2.7
230,242 + -3.2
230,242 + +0.4
230,277 + -2.5
230,278 - -1.2
230,278 - +0.7
230,278 - +1.0
230,278 - -1.8
230,278 - -3.3
230,278 - -3.1
230,387 - PfGW456L13_201 0.17 -1.0
230,808 + PfGW456L13_201 0.45 -1.0
230,809 - PfGW456L13_201 0.45 -2.5
230,827 - PfGW456L13_201 0.46 -0.2
230,983 + PfGW456L13_201 0.57 -0.1
230,993 - PfGW456L13_201 0.57 -2.0

Or see this region's nucleotide sequence