Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1996

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1994 and PfGW456L13_1995 are separated by 63 nucleotidesPfGW456L13_1995 and PfGW456L13_1996 are separated by 152 nucleotidesPfGW456L13_1996 and PfGW456L13_1997 are separated by 48 nucleotidesPfGW456L13_1997 and PfGW456L13_1998 are separated by 167 nucleotides PfGW456L13_1994 - Transporter, MFS superfamily, at 2,197,964 to 2,199,346 _1994 PfGW456L13_1995 - FIG00955605: hypothetical protein, at 2,199,410 to 2,200,096 _1995 PfGW456L13_1996 - Flagellar biosynthesis protein FlgN, at 2,200,249 to 2,200,716 _1996 PfGW456L13_1997 - Negative regulator of flagellin synthesis FlgM, at 2,200,765 to 2,201,091 _1997 PfGW456L13_1998 - Flagellar basal-body P-ring formation protein FlgA, at 2,201,259 to 2,202,017 _1998 Position (kb) 2200 2201Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2199.307 kb on + strandat 2199.307 kb on + strandat 2199.307 kb on + strandat 2199.308 kb on - strandat 2199.323 kb on - strandat 2199.344 kb on + strandat 2199.345 kb on - strandat 2199.408 kb on + strandat 2199.457 kb on - strandat 2199.613 kb on - strand, within PfGW456L13_1995at 2199.682 kb on + strand, within PfGW456L13_1995at 2199.682 kb on + strand, within PfGW456L13_1995at 2199.682 kb on + strand, within PfGW456L13_1995at 2199.682 kb on + strand, within PfGW456L13_1995at 2199.682 kb on + strand, within PfGW456L13_1995at 2199.683 kb on - strand, within PfGW456L13_1995at 2199.683 kb on - strand, within PfGW456L13_1995at 2199.792 kb on + strand, within PfGW456L13_1995at 2199.792 kb on + strand, within PfGW456L13_1995at 2199.792 kb on + strand, within PfGW456L13_1995at 2199.792 kb on + strand, within PfGW456L13_1995at 2199.793 kb on - strand, within PfGW456L13_1995at 2199.822 kb on + strand, within PfGW456L13_1995at 2199.823 kb on - strand, within PfGW456L13_1995at 2199.885 kb on - strand, within PfGW456L13_1995at 2199.933 kb on + strand, within PfGW456L13_1995at 2199.933 kb on + strand, within PfGW456L13_1995at 2199.934 kb on - strand, within PfGW456L13_1995at 2199.934 kb on - strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.005 kb on + strand, within PfGW456L13_1995at 2200.006 kb on - strand, within PfGW456L13_1995at 2200.006 kb on - strand, within PfGW456L13_1995at 2200.006 kb on - strand, within PfGW456L13_1995at 2200.006 kb on - strand, within PfGW456L13_1995at 2200.006 kb on - strand, within PfGW456L13_1995at 2200.160 kb on + strandat 2200.160 kb on + strandat 2200.160 kb on + strandat 2200.161 kb on - strandat 2200.187 kb on - strandat 2200.210 kb on + strandat 2200.227 kb on + strandat 2200.227 kb on + strandat 2200.308 kb on - strand, within PfGW456L13_1996at 2200.648 kb on + strand, within PfGW456L13_1996at 2200.649 kb on - strand, within PfGW456L13_1996at 2200.699 kb on + strandat 2200.700 kb on - strandat 2200.700 kb on - strandat 2200.733 kb on + strandat 2200.734 kb on - strandat 2200.821 kb on + strand, within PfGW456L13_1997at 2200.822 kb on - strand, within PfGW456L13_1997at 2200.822 kb on - strand, within PfGW456L13_1997at 2200.823 kb on + strand, within PfGW456L13_1997at 2200.823 kb on + strand, within PfGW456L13_1997at 2200.824 kb on - strand, within PfGW456L13_1997at 2200.824 kb on - strand, within PfGW456L13_1997at 2200.824 kb on - strand, within PfGW456L13_1997at 2200.824 kb on - strand, within PfGW456L13_1997at 2200.824 kb on - strand, within PfGW456L13_1997at 2200.940 kb on - strand, within PfGW456L13_1997at 2200.940 kb on - strand, within PfGW456L13_1997at 2201.034 kb on + strand, within PfGW456L13_1997at 2201.034 kb on + strandat 2201.034 kb on + strand, within PfGW456L13_1997at 2201.041 kb on - strand, within PfGW456L13_1997at 2201.041 kb on - strand, within PfGW456L13_1997at 2201.041 kb on - strand, within PfGW456L13_1997at 2201.041 kb on - strand, within PfGW456L13_1997at 2201.095 kb on - strandat 2201.095 kb on - strandat 2201.163 kb on + strandat 2201.163 kb on + strandat 2201.164 kb on - strandat 2201.164 kb on - strandat 2201.164 kb on - strandat 2201.214 kb on - strandat 2201.214 kb on - strandat 2201.260 kb on + strandat 2201.260 kb on + strandat 2201.260 kb on + strandat 2201.260 kb on + strandat 2201.260 kb on + strandat 2201.260 kb on + strandat 2201.468 kb on + strand, within PfGW456L13_1998at 2201.469 kb on - strand, within PfGW456L13_1998at 2201.469 kb on - strand, within PfGW456L13_1998at 2201.536 kb on + strand, within PfGW456L13_1998

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,199,307 + -0.5
2,199,307 + +1.8
2,199,307 + -0.8
2,199,308 - +3.5
2,199,323 - +0.4
2,199,344 + +3.6
2,199,345 - -0.8
2,199,408 + -0.6
2,199,457 - +1.0
2,199,613 - PfGW456L13_1995 0.30 -4.0
2,199,682 + PfGW456L13_1995 0.40 +0.4
2,199,682 + PfGW456L13_1995 0.40 +1.7
2,199,682 + PfGW456L13_1995 0.40 +0.5
2,199,682 + PfGW456L13_1995 0.40 +0.5
2,199,682 + PfGW456L13_1995 0.40 -3.2
2,199,683 - PfGW456L13_1995 0.40 -0.6
2,199,683 - PfGW456L13_1995 0.40 -0.1
2,199,792 + PfGW456L13_1995 0.56 +1.9
2,199,792 + PfGW456L13_1995 0.56 +2.1
2,199,792 + PfGW456L13_1995 0.56 -3.1
2,199,792 + PfGW456L13_1995 0.56 -0.0
2,199,793 - PfGW456L13_1995 0.56 +0.3
2,199,822 + PfGW456L13_1995 0.60 +0.1
2,199,823 - PfGW456L13_1995 0.60 +1.3
2,199,885 - PfGW456L13_1995 0.69 -0.4
2,199,933 + PfGW456L13_1995 0.76 -0.0
2,199,933 + PfGW456L13_1995 0.76 -0.9
2,199,934 - PfGW456L13_1995 0.76 +2.7
2,199,934 - PfGW456L13_1995 0.76 -2.7
2,200,005 + PfGW456L13_1995 0.87 +0.6
2,200,005 + PfGW456L13_1995 0.87 +2.0
2,200,005 + PfGW456L13_1995 0.87 +1.7
2,200,005 + PfGW456L13_1995 0.87 +1.2
2,200,005 + PfGW456L13_1995 0.87 -0.2
2,200,005 + PfGW456L13_1995 0.87 -0.5
2,200,005 + PfGW456L13_1995 0.87 -1.5
2,200,006 - PfGW456L13_1995 0.87 +0.7
2,200,006 - PfGW456L13_1995 0.87 -0.3
2,200,006 - PfGW456L13_1995 0.87 +0.7
2,200,006 - PfGW456L13_1995 0.87 -0.8
2,200,006 - PfGW456L13_1995 0.87 +1.7
2,200,160 + -0.5
2,200,160 + +0.1
2,200,160 + -0.5
2,200,161 - -2.7
2,200,187 - -1.8
2,200,210 + +0.3
2,200,227 + -1.5
2,200,227 + -2.9
2,200,308 - PfGW456L13_1996 0.13 -1.4
2,200,648 + PfGW456L13_1996 0.85 -2.8
2,200,649 - PfGW456L13_1996 0.85 -2.4
2,200,699 + +0.8
2,200,700 - -0.9
2,200,700 - +3.5
2,200,733 + +1.9
2,200,734 - +0.2
2,200,821 + PfGW456L13_1997 0.17 -0.8
2,200,822 - PfGW456L13_1997 0.17 -2.3
2,200,822 - PfGW456L13_1997 0.17 -2.1
2,200,823 + PfGW456L13_1997 0.18 -1.3
2,200,823 + PfGW456L13_1997 0.18 -0.8
2,200,824 - PfGW456L13_1997 0.18 -1.6
2,200,824 - PfGW456L13_1997 0.18 -1.9
2,200,824 - PfGW456L13_1997 0.18 -1.5
2,200,824 - PfGW456L13_1997 0.18 -2.7
2,200,824 - PfGW456L13_1997 0.18 -3.3
2,200,940 - PfGW456L13_1997 0.54 -0.9
2,200,940 - PfGW456L13_1997 0.54 +1.0
2,201,034 + PfGW456L13_1997 0.82 -2.5
2,201,034 + -1.3
2,201,034 + PfGW456L13_1997 0.82 +2.2
2,201,041 - PfGW456L13_1997 0.84 +0.3
2,201,041 - PfGW456L13_1997 0.84 +0.8
2,201,041 - PfGW456L13_1997 0.84 +0.5
2,201,041 - PfGW456L13_1997 0.84 +1.0
2,201,095 - -1.1
2,201,095 - +0.6
2,201,163 + -1.0
2,201,163 + +0.5
2,201,164 - -2.6
2,201,164 - -0.1
2,201,164 - +2.5
2,201,214 - -0.8
2,201,214 - +2.2
2,201,260 + +1.7
2,201,260 + -1.5
2,201,260 + -3.2
2,201,260 + +1.8
2,201,260 + +0.1
2,201,260 + +2.1
2,201,468 + PfGW456L13_1998 0.28 +0.8
2,201,469 - PfGW456L13_1998 0.28 -2.5
2,201,469 - PfGW456L13_1998 0.28 -0.9
2,201,536 + PfGW456L13_1998 0.36 -1.9

Or see this region's nucleotide sequence