Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1468 and PfGW456L13_1469 are separated by 239 nucleotides PfGW456L13_1469 and PfGW456L13_1470 are separated by 35 nucleotides PfGW456L13_1470 and PfGW456L13_1471 are separated by 195 nucleotides
PfGW456L13_1468 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 1,621,241 to 1,622,209
_1468
PfGW456L13_1469 - LSU ribosomal protein L21p, at 1,622,449 to 1,622,763
_1469
PfGW456L13_1470 - LSU ribosomal protein L27p, at 1,622,799 to 1,623,056
_1470
PfGW456L13_1471 - GTP-binding protein Obg, at 1,623,252 to 1,624,475
_1471
Position (kb)
1622
1623
1624 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1622.400 kb on + strand at 1622.400 kb on + strand at 1622.400 kb on + strand at 1622.761 kb on + strand at 1623.150 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.161 kb on + strand at 1623.161 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,622,400 + +0.2 1,622,400 + -2.5 1,622,400 + +1.7 1,622,761 + -0.6 1,623,150 + -0.9 1,623,157 + -2.0 1,623,157 + -1.5 1,623,157 + -1.7 1,623,157 + -2.2 1,623,157 + -0.6 1,623,157 + -2.6 1,623,157 + +0.9 1,623,157 + -0.5 1,623,157 + +1.6 1,623,157 + -1.2 1,623,157 + -2.2 1,623,157 + +1.4 1,623,157 + -0.3 1,623,161 + +2.1 1,623,161 + -0.9 1,623,203 + -1.4 1,623,203 + +1.2 1,623,203 + +0.5 1,623,203 + +3.7 1,623,203 + +0.6 1,623,203 + -2.8 1,623,203 + +0.3 1,623,203 + -3.1
Or see this region's nucleotide sequence