Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1470

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1468 and PfGW456L13_1469 are separated by 239 nucleotidesPfGW456L13_1469 and PfGW456L13_1470 are separated by 35 nucleotidesPfGW456L13_1470 and PfGW456L13_1471 are separated by 195 nucleotides PfGW456L13_1468 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 1,621,241 to 1,622,209 _1468 PfGW456L13_1469 - LSU ribosomal protein L21p, at 1,622,449 to 1,622,763 _1469 PfGW456L13_1470 - LSU ribosomal protein L27p, at 1,622,799 to 1,623,056 _1470 PfGW456L13_1471 - GTP-binding protein Obg, at 1,623,252 to 1,624,475 _1471 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1622.400 kb on + strandat 1622.400 kb on + strandat 1622.400 kb on + strandat 1622.761 kb on + strandat 1623.150 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.161 kb on + strandat 1623.161 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,622,400 + +0.2
1,622,400 + -2.5
1,622,400 + +1.7
1,622,761 + -0.6
1,623,150 + -0.9
1,623,157 + -2.0
1,623,157 + -1.5
1,623,157 + -1.7
1,623,157 + -2.2
1,623,157 + -0.6
1,623,157 + -2.6
1,623,157 + +0.9
1,623,157 + -0.5
1,623,157 + +1.6
1,623,157 + -1.2
1,623,157 + -2.2
1,623,157 + +1.4
1,623,157 + -0.3
1,623,161 + +2.1
1,623,161 + -0.9
1,623,203 + -1.4
1,623,203 + +1.2
1,623,203 + +0.5
1,623,203 + +3.7
1,623,203 + +0.6
1,623,203 + -2.8
1,623,203 + +0.3
1,623,203 + -3.1

Or see this region's nucleotide sequence