Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1446 and PfGW456L13_1447 are separated by 122 nucleotides PfGW456L13_1447 and PfGW456L13_1448 are separated by 25 nucleotides PfGW456L13_1448 and PfGW456L13_1449 are separated by 57 nucleotides
PfGW456L13_1446 - COG0523: Putative GTPases (G3E family), at 1,595,680 to 1,596,651
_1446
PfGW456L13_1447 - Transcriptional regulator, GntR family, at 1,596,774 to 1,597,454
_1447
PfGW456L13_1448 - Transcriptional regulator, GntR family, at 1,597,480 to 1,598,184
_1448
PfGW456L13_1449 - probable dicarboxylate transporter, at 1,598,242 to 1,599,504
_1449
Position (kb)
1597
1598
1599 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1596.526 kb on + strand, within PfGW456L13_1446 at 1596.526 kb on + strand, within PfGW456L13_1446 at 1596.657 kb on + strand at 1596.657 kb on + strand at 1596.658 kb on - strand at 1596.803 kb on + strand at 1596.803 kb on + strand at 1596.803 kb on + strand at 1596.803 kb on + strand at 1596.803 kb on + strand at 1596.804 kb on - strand at 1596.804 kb on - strand at 1596.804 kb on - strand at 1596.804 kb on - strand at 1596.804 kb on - strand at 1596.843 kb on + strand, within PfGW456L13_1447 at 1596.844 kb on - strand, within PfGW456L13_1447 at 1597.093 kb on - strand, within PfGW456L13_1447 at 1597.757 kb on + strand, within PfGW456L13_1448 at 1597.892 kb on + strand, within PfGW456L13_1448 at 1597.893 kb on - strand, within PfGW456L13_1448 at 1597.943 kb on + strand, within PfGW456L13_1448 at 1597.975 kb on + strand, within PfGW456L13_1448 at 1597.976 kb on - strand, within PfGW456L13_1448 at 1598.150 kb on - strand at 1598.178 kb on + strand at 1598.200 kb on + strand at 1598.200 kb on + strand at 1598.292 kb on + strand at 1598.292 kb on + strand at 1598.293 kb on - strand at 1598.293 kb on - strand at 1598.293 kb on - strand at 1598.293 kb on - strand at 1598.293 kb on - strand at 1598.293 kb on - strand at 1598.294 kb on + strand at 1598.294 kb on + strand at 1598.295 kb on - strand at 1598.617 kb on - strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.630 kb on + strand, within PfGW456L13_1449 at 1598.631 kb on - strand, within PfGW456L13_1449 at 1598.789 kb on + strand, within PfGW456L13_1449 at 1598.789 kb on + strand, within PfGW456L13_1449 at 1598.790 kb on - strand, within PfGW456L13_1449 at 1598.790 kb on - strand, within PfGW456L13_1449 at 1598.790 kb on - strand, within PfGW456L13_1449 at 1598.790 kb on - strand, within PfGW456L13_1449 at 1598.790 kb on - strand, within PfGW456L13_1449 at 1598.873 kb on + strand, within PfGW456L13_1449 at 1598.873 kb on + strand, within PfGW456L13_1449 at 1598.873 kb on + strand, within PfGW456L13_1449 at 1598.873 kb on + strand, within PfGW456L13_1449 at 1598.873 kb on + strand, within PfGW456L13_1449 at 1598.874 kb on - strand, within PfGW456L13_1449 at 1598.921 kb on + strand, within PfGW456L13_1449 at 1598.921 kb on + strand, within PfGW456L13_1449 at 1598.921 kb on + strand, within PfGW456L13_1449 at 1598.922 kb on - strand, within PfGW456L13_1449 at 1598.922 kb on - strand, within PfGW456L13_1449 at 1598.922 kb on - strand, within PfGW456L13_1449 at 1598.925 kb on + strand, within PfGW456L13_1449 at 1598.926 kb on - strand, within PfGW456L13_1449 at 1598.926 kb on - strand, within PfGW456L13_1449 at 1598.926 kb on - strand, within PfGW456L13_1449 at 1598.926 kb on - strand, within PfGW456L13_1449 at 1598.953 kb on + strand, within PfGW456L13_1449 at 1598.953 kb on + strand, within PfGW456L13_1449 at 1598.954 kb on - strand, within PfGW456L13_1449 at 1598.954 kb on - strand, within PfGW456L13_1449 at 1598.954 kb on - strand, within PfGW456L13_1449 at 1598.954 kb on - strand, within PfGW456L13_1449
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,596,526 + PfGW456L13_1446 0.87 +1.7 1,596,526 + PfGW456L13_1446 0.87 +0.7 1,596,657 + +0.2 1,596,657 + +1.0 1,596,658 - +0.4 1,596,803 + -1.0 1,596,803 + -2.8 1,596,803 + -0.1 1,596,803 + -3.0 1,596,803 + -0.1 1,596,804 - -3.2 1,596,804 - -2.8 1,596,804 - -1.9 1,596,804 - -2.0 1,596,804 - -1.5 1,596,843 + PfGW456L13_1447 0.10 +0.1 1,596,844 - PfGW456L13_1447 0.10 +1.2 1,597,093 - PfGW456L13_1447 0.47 +0.6 1,597,757 + PfGW456L13_1448 0.39 -0.2 1,597,892 + PfGW456L13_1448 0.58 -0.5 1,597,893 - PfGW456L13_1448 0.59 -0.9 1,597,943 + PfGW456L13_1448 0.66 -2.3 1,597,975 + PfGW456L13_1448 0.70 -3.2 1,597,976 - PfGW456L13_1448 0.70 -1.6 1,598,150 - -2.6 1,598,178 + +1.7 1,598,200 + +1.0 1,598,200 + +3.0 1,598,292 + -2.6 1,598,292 + -3.9 1,598,293 - -2.9 1,598,293 - -0.5 1,598,293 - +1.0 1,598,293 - -2.6 1,598,293 - -1.0 1,598,293 - -1.3 1,598,294 + -1.6 1,598,294 + +0.0 1,598,295 - +1.3 1,598,617 - PfGW456L13_1449 0.30 -3.0 1,598,630 + PfGW456L13_1449 0.31 +1.8 1,598,630 + PfGW456L13_1449 0.31 -2.0 1,598,630 + PfGW456L13_1449 0.31 +1.1 1,598,630 + PfGW456L13_1449 0.31 -3.7 1,598,630 + PfGW456L13_1449 0.31 +1.2 1,598,630 + PfGW456L13_1449 0.31 -3.8 1,598,630 + PfGW456L13_1449 0.31 -1.1 1,598,631 - PfGW456L13_1449 0.31 +2.6 1,598,789 + PfGW456L13_1449 0.43 -1.0 1,598,789 + PfGW456L13_1449 0.43 +0.3 1,598,790 - PfGW456L13_1449 0.43 +1.8 1,598,790 - PfGW456L13_1449 0.43 +0.9 1,598,790 - PfGW456L13_1449 0.43 +0.3 1,598,790 - PfGW456L13_1449 0.43 +0.9 1,598,790 - PfGW456L13_1449 0.43 -2.4 1,598,873 + PfGW456L13_1449 0.50 -1.6 1,598,873 + PfGW456L13_1449 0.50 -3.1 1,598,873 + PfGW456L13_1449 0.50 +2.2 1,598,873 + PfGW456L13_1449 0.50 +2.5 1,598,873 + PfGW456L13_1449 0.50 -1.9 1,598,874 - PfGW456L13_1449 0.50 +2.2 1,598,921 + PfGW456L13_1449 0.54 +1.7 1,598,921 + PfGW456L13_1449 0.54 +0.6 1,598,921 + PfGW456L13_1449 0.54 -2.9 1,598,922 - PfGW456L13_1449 0.54 +0.6 1,598,922 - PfGW456L13_1449 0.54 -0.5 1,598,922 - PfGW456L13_1449 0.54 -1.9 1,598,925 + PfGW456L13_1449 0.54 +0.8 1,598,926 - PfGW456L13_1449 0.54 +0.8 1,598,926 - PfGW456L13_1449 0.54 +2.2 1,598,926 - PfGW456L13_1449 0.54 -0.5 1,598,926 - PfGW456L13_1449 0.54 -2.8 1,598,953 + PfGW456L13_1449 0.56 -1.1 1,598,953 + PfGW456L13_1449 0.56 +1.4 1,598,954 - PfGW456L13_1449 0.56 +1.2 1,598,954 - PfGW456L13_1449 0.56 +1.1 1,598,954 - PfGW456L13_1449 0.56 -1.9 1,598,954 - PfGW456L13_1449 0.56 +0.6
Or see this region's nucleotide sequence