Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1360

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1358 and PfGW456L13_1359 are separated by 9 nucleotidesPfGW456L13_1359 and PfGW456L13_1360 are separated by 10 nucleotidesPfGW456L13_1360 and PfGW456L13_1361 overlap by 8 nucleotides PfGW456L13_1358 - Iojap protein, at 1,502,728 to 1,503,222 _1358 PfGW456L13_1359 - LSU m3Psi1915 methyltransferase RlmH, at 1,503,232 to 1,503,699 _1359 PfGW456L13_1360 - Penicillin-binding protein 2 (PBP-2), at 1,503,710 to 1,505,605 _1360 PfGW456L13_1361 - Rod shape-determining protein RodA, at 1,505,598 to 1,506,740 _1361 Position (kb) 1503 1504 1505 1506Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1502.920 kb on + strand, within PfGW456L13_1358at 1503.298 kb on + strand, within PfGW456L13_1359at 1503.298 kb on + strand, within PfGW456L13_1359at 1503.298 kb on + strand, within PfGW456L13_1359at 1503.354 kb on + strand, within PfGW456L13_1359at 1503.474 kb on + strand, within PfGW456L13_1359at 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.688 kb on + strandat 1503.688 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1505.561 kb on + strandat 1505.572 kb on + strandat 1505.572 kb on + strandat 1505.603 kb on + strandat 1505.603 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
1,502,920 + PfGW456L13_1358 0.39 -1.1
1,503,298 + PfGW456L13_1359 0.14 +0.5
1,503,298 + PfGW456L13_1359 0.14 +1.6
1,503,298 + PfGW456L13_1359 0.14 -1.6
1,503,354 + PfGW456L13_1359 0.26 -3.2
1,503,474 + PfGW456L13_1359 0.52 +1.7
1,503,655 + -1.8
1,503,655 + -0.3
1,503,655 + +1.6
1,503,655 + +1.3
1,503,655 + +0.7
1,503,655 + -0.3
1,503,655 + -1.2
1,503,688 + -3.0
1,503,688 + +1.6
1,503,697 + +0.9
1,503,697 + +1.3
1,503,697 + +0.7
1,503,697 + -2.7
1,503,697 + -2.3
1,503,697 + +0.5
1,503,697 + -1.1
1,503,697 + +3.5
1,505,561 + -2.3
1,505,572 + +1.3
1,505,572 + +1.4
1,505,603 + -0.3
1,505,603 + -1.1

Or see this region's nucleotide sequence