Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_124 and PfGW456L13_125 are separated by 6 nucleotides PfGW456L13_125 and PfGW456L13_126 are separated by 191 nucleotides
PfGW456L13_124 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 139,981 to 141,114
_124
PfGW456L13_125 - hypothetical protein, at 141,121 to 141,285
_125
PfGW456L13_126 - L-pipecolate oxidase (1.5.3.7), at 141,477 to 142,760
_126
Position (kb) 141
142 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 140.189 kb on + strand, within PfGW456L13_124 at 140.189 kb on + strand, within PfGW456L13_124 at 140.190 kb on - strand, within PfGW456L13_124 at 140.190 kb on - strand, within PfGW456L13_124 at 140.196 kb on - strand, within PfGW456L13_124 at 140.196 kb on - strand, within PfGW456L13_124 at 140.196 kb on - strand, within PfGW456L13_124 at 140.196 kb on - strand, within PfGW456L13_124 at 140.204 kb on + strand, within PfGW456L13_124 at 140.204 kb on + strand, within PfGW456L13_124 at 140.204 kb on + strand, within PfGW456L13_124 at 140.444 kb on + strand, within PfGW456L13_124 at 140.445 kb on - strand, within PfGW456L13_124 at 140.522 kb on + strand, within PfGW456L13_124 at 140.522 kb on + strand, within PfGW456L13_124 at 140.522 kb on + strand, within PfGW456L13_124 at 140.523 kb on - strand, within PfGW456L13_124 at 140.523 kb on - strand, within PfGW456L13_124 at 140.523 kb on - strand, within PfGW456L13_124 at 140.523 kb on - strand, within PfGW456L13_124 at 140.537 kb on - strand, within PfGW456L13_124 at 140.565 kb on + strand, within PfGW456L13_124 at 140.565 kb on + strand, within PfGW456L13_124 at 140.565 kb on + strand, within PfGW456L13_124 at 140.566 kb on - strand, within PfGW456L13_124 at 140.566 kb on - strand, within PfGW456L13_124 at 140.588 kb on + strand, within PfGW456L13_124 at 140.588 kb on + strand, within PfGW456L13_124 at 140.588 kb on + strand, within PfGW456L13_124 at 140.589 kb on - strand, within PfGW456L13_124 at 140.645 kb on + strand, within PfGW456L13_124 at 140.645 kb on + strand, within PfGW456L13_124 at 140.645 kb on + strand, within PfGW456L13_124 at 140.646 kb on - strand, within PfGW456L13_124 at 140.646 kb on - strand, within PfGW456L13_124 at 140.646 kb on - strand, within PfGW456L13_124 at 140.646 kb on - strand, within PfGW456L13_124 at 140.688 kb on + strand, within PfGW456L13_124 at 140.688 kb on + strand, within PfGW456L13_124 at 140.688 kb on + strand, within PfGW456L13_124 at 140.688 kb on + strand, within PfGW456L13_124 at 140.688 kb on + strand, within PfGW456L13_124 at 140.689 kb on - strand, within PfGW456L13_124 at 140.689 kb on - strand, within PfGW456L13_124 at 140.689 kb on - strand, within PfGW456L13_124 at 140.689 kb on - strand, within PfGW456L13_124 at 140.689 kb on - strand, within PfGW456L13_124 at 140.771 kb on + strand, within PfGW456L13_124 at 140.772 kb on - strand, within PfGW456L13_124 at 140.772 kb on - strand, within PfGW456L13_124 at 140.902 kb on + strand, within PfGW456L13_124 at 140.902 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.972 kb on + strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 140.973 kb on - strand, within PfGW456L13_124 at 141.098 kb on + strand at 141.139 kb on - strand, within PfGW456L13_125 at 141.283 kb on + strand at 141.284 kb on - strand at 141.284 kb on - strand at 141.297 kb on - strand at 141.342 kb on - strand at 141.363 kb on + strand at 141.363 kb on + strand at 141.364 kb on - strand at 141.364 kb on - strand at 141.408 kb on + strand at 141.408 kb on + strand at 141.408 kb on + strand at 141.409 kb on - strand at 141.409 kb on - strand at 141.409 kb on - strand at 141.423 kb on + strand at 141.423 kb on + strand at 141.423 kb on + strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.533 kb on - strand at 141.533 kb on - strand at 141.533 kb on - strand at 141.533 kb on - strand at 141.533 kb on - strand at 141.533 kb on - strand at 141.612 kb on - strand, within PfGW456L13_126 at 141.612 kb on - strand, within PfGW456L13_126 at 141.619 kb on + strand, within PfGW456L13_126 at 141.793 kb on + strand, within PfGW456L13_126 at 141.793 kb on + strand, within PfGW456L13_126 at 141.793 kb on + strand, within PfGW456L13_126 at 141.793 kb on + strand, within PfGW456L13_126 at 141.995 kb on - strand, within PfGW456L13_126 at 141.997 kb on + strand, within PfGW456L13_126 at 141.997 kb on + strand, within PfGW456L13_126 at 141.997 kb on + strand, within PfGW456L13_126 at 141.997 kb on + strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 141.998 kb on - strand, within PfGW456L13_126 at 142.000 kb on + strand, within PfGW456L13_126 at 142.048 kb on + strand, within PfGW456L13_126 at 142.049 kb on - strand, within PfGW456L13_126 at 142.049 kb on - strand, within PfGW456L13_126 at 142.105 kb on - strand, within PfGW456L13_126 at 142.105 kb on - strand, within PfGW456L13_126 at 142.105 kb on - strand, within PfGW456L13_126 at 142.204 kb on + strand, within PfGW456L13_126 at 142.205 kb on - strand, within PfGW456L13_126 at 142.205 kb on - strand, within PfGW456L13_126 at 142.205 kb on - strand, within PfGW456L13_126
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 140,189 + PfGW456L13_124 0.18 -3.0 140,189 + PfGW456L13_124 0.18 -1.2 140,190 - PfGW456L13_124 0.18 -1.9 140,190 - PfGW456L13_124 0.18 -0.5 140,196 - PfGW456L13_124 0.19 -0.3 140,196 - PfGW456L13_124 0.19 +1.6 140,196 - PfGW456L13_124 0.19 -2.8 140,196 - PfGW456L13_124 0.19 -2.2 140,204 + PfGW456L13_124 0.20 +0.5 140,204 + PfGW456L13_124 0.20 +1.6 140,204 + PfGW456L13_124 0.20 +1.1 140,444 + PfGW456L13_124 0.41 -1.1 140,445 - PfGW456L13_124 0.41 +1.3 140,522 + PfGW456L13_124 0.48 -3.3 140,522 + PfGW456L13_124 0.48 -1.2 140,522 + PfGW456L13_124 0.48 +0.1 140,523 - PfGW456L13_124 0.48 -3.6 140,523 - PfGW456L13_124 0.48 -0.3 140,523 - PfGW456L13_124 0.48 -1.7 140,523 - PfGW456L13_124 0.48 -2.0 140,537 - PfGW456L13_124 0.49 -2.8 140,565 + PfGW456L13_124 0.51 +1.2 140,565 + PfGW456L13_124 0.51 -2.7 140,565 + PfGW456L13_124 0.51 +0.2 140,566 - PfGW456L13_124 0.52 -2.8 140,566 - PfGW456L13_124 0.52 +2.5 140,588 + PfGW456L13_124 0.54 -1.6 140,588 + PfGW456L13_124 0.54 -2.0 140,588 + PfGW456L13_124 0.54 -2.3 140,589 - PfGW456L13_124 0.54 -0.2 140,645 + PfGW456L13_124 0.59 -0.4 140,645 + PfGW456L13_124 0.59 -0.2 140,645 + PfGW456L13_124 0.59 -1.8 140,646 - PfGW456L13_124 0.59 -1.2 140,646 - PfGW456L13_124 0.59 -1.2 140,646 - PfGW456L13_124 0.59 +0.4 140,646 - PfGW456L13_124 0.59 -2.0 140,688 + PfGW456L13_124 0.62 -1.8 140,688 + PfGW456L13_124 0.62 -0.4 140,688 + PfGW456L13_124 0.62 -3.1 140,688 + PfGW456L13_124 0.62 -2.2 140,688 + PfGW456L13_124 0.62 -1.8 140,689 - PfGW456L13_124 0.62 +0.3 140,689 - PfGW456L13_124 0.62 +2.5 140,689 - PfGW456L13_124 0.62 +0.7 140,689 - PfGW456L13_124 0.62 +0.6 140,689 - PfGW456L13_124 0.62 -3.0 140,771 + PfGW456L13_124 0.70 -1.2 140,772 - PfGW456L13_124 0.70 -0.2 140,772 - PfGW456L13_124 0.70 +0.2 140,902 + PfGW456L13_124 0.81 -0.9 140,902 + PfGW456L13_124 0.81 -1.8 140,972 + PfGW456L13_124 0.87 +1.3 140,972 + PfGW456L13_124 0.87 -1.0 140,972 + PfGW456L13_124 0.87 -1.8 140,972 + PfGW456L13_124 0.87 +0.4 140,972 + PfGW456L13_124 0.87 +2.3 140,972 + PfGW456L13_124 0.87 -3.3 140,972 + PfGW456L13_124 0.87 -2.2 140,972 + PfGW456L13_124 0.87 -3.0 140,972 + PfGW456L13_124 0.87 -2.5 140,972 + PfGW456L13_124 0.87 +0.5 140,972 + PfGW456L13_124 0.87 +2.2 140,972 + PfGW456L13_124 0.87 +0.6 140,973 - PfGW456L13_124 0.87 -1.3 140,973 - PfGW456L13_124 0.87 -0.7 140,973 - PfGW456L13_124 0.87 -2.4 140,973 - PfGW456L13_124 0.87 +0.4 140,973 - PfGW456L13_124 0.87 -3.6 140,973 - PfGW456L13_124 0.87 +1.4 140,973 - PfGW456L13_124 0.87 +1.7 140,973 - PfGW456L13_124 0.87 -0.2 140,973 - PfGW456L13_124 0.87 -2.3 140,973 - PfGW456L13_124 0.87 -3.9 140,973 - PfGW456L13_124 0.87 -1.1 140,973 - PfGW456L13_124 0.87 +0.9 140,973 - PfGW456L13_124 0.87 +0.7 141,098 + -1.2 141,139 - PfGW456L13_125 0.11 -3.3 141,283 + +1.5 141,284 - -2.3 141,284 - -1.9 141,297 - -1.0 141,342 - -2.9 141,363 + -1.2 141,363 + -2.1 141,364 - -2.6 141,364 - -1.6 141,408 + -3.4 141,408 + -2.5 141,408 + -1.7 141,409 - -2.2 141,409 - +2.2 141,409 - -0.2 141,423 + -2.4 141,423 + -0.0 141,423 + -0.8 141,424 - +2.1 141,424 - +1.4 141,532 + +2.3 141,532 + -0.5 141,532 + +0.5 141,532 + -0.2 141,532 + +0.8 141,532 + +0.8 141,533 - -0.6 141,533 - -0.2 141,533 - -1.1 141,533 - -0.8 141,533 - +0.7 141,533 - +1.2 141,612 - PfGW456L13_126 0.11 -2.4 141,612 - PfGW456L13_126 0.11 -2.9 141,619 + PfGW456L13_126 0.11 +0.6 141,793 + PfGW456L13_126 0.25 -0.8 141,793 + PfGW456L13_126 0.25 +0.5 141,793 + PfGW456L13_126 0.25 -2.3 141,793 + PfGW456L13_126 0.25 -0.1 141,995 - PfGW456L13_126 0.40 +1.5 141,997 + PfGW456L13_126 0.40 +2.3 141,997 + PfGW456L13_126 0.40 +1.2 141,997 + PfGW456L13_126 0.40 +1.8 141,997 + PfGW456L13_126 0.40 +2.3 141,998 - PfGW456L13_126 0.41 -0.0 141,998 - PfGW456L13_126 0.41 -0.4 141,998 - PfGW456L13_126 0.41 -1.7 141,998 - PfGW456L13_126 0.41 -1.4 141,998 - PfGW456L13_126 0.41 -1.1 141,998 - PfGW456L13_126 0.41 -0.6 141,998 - PfGW456L13_126 0.41 -4.3 142,000 + PfGW456L13_126 0.41 +0.3 142,048 + PfGW456L13_126 0.44 -0.3 142,049 - PfGW456L13_126 0.45 -3.8 142,049 - PfGW456L13_126 0.45 -2.6 142,105 - PfGW456L13_126 0.49 +0.2 142,105 - PfGW456L13_126 0.49 +0.8 142,105 - PfGW456L13_126 0.49 -1.9 142,204 + PfGW456L13_126 0.57 +1.0 142,205 - PfGW456L13_126 0.57 -1.3 142,205 - PfGW456L13_126 0.57 +1.1 142,205 - PfGW456L13_126 0.57 +0.9
Or see this region's nucleotide sequence