Strain Fitness in Pseudomonas simiae WCS417 around PS417_18235

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18230 and PS417_18235 are separated by 73 nucleotidesPS417_18235 and PS417_18240 are separated by 41 nucleotidesPS417_18240 and PS417_18245 overlap by 4 nucleotides PS417_18230: PS417_18230 - amidase, at 3,972,172 to 3,973,686 _18230 PS417_18235: PS417_18235 - nitrile hydratase, at 3,973,760 to 3,974,353 _18235 PS417_18240: PS417_18240 - nitrile hydratase, at 3,974,395 to 3,975,057 _18240 PS417_18245: PS417_18245 - hypothetical protein, at 3,975,054 to 3,976,313 _18245 Position (kb) 3973 3974 3975Strain fitness (log2 ratio) -2 -1 0 1at 3972.788 kb on - strandat 3972.801 kb on + strand, within PS417_18230at 3972.801 kb on + strand, within PS417_18230at 3972.820 kb on + strand, within PS417_18230at 3972.820 kb on + strand, within PS417_18230at 3972.964 kb on + strand, within PS417_18230at 3972.964 kb on + strand, within PS417_18230at 3972.965 kb on - strand, within PS417_18230at 3972.965 kb on - strand, within PS417_18230at 3973.228 kb on + strand, within PS417_18230at 3973.229 kb on - strand, within PS417_18230at 3973.336 kb on + strand, within PS417_18230at 3973.393 kb on + strand, within PS417_18230at 3973.489 kb on + strand, within PS417_18230at 3973.490 kb on - strand, within PS417_18230at 3973.618 kb on + strandat 3973.733 kb on - strandat 3973.932 kb on + strand, within PS417_18235at 3974.016 kb on - strand, within PS417_18235at 3974.241 kb on - strand, within PS417_18235at 3974.457 kb on + strandat 3974.477 kb on + strand, within PS417_18240at 3974.477 kb on + strand, within PS417_18240at 3974.507 kb on - strand, within PS417_18240at 3974.615 kb on - strand, within PS417_18240at 3974.623 kb on + strand, within PS417_18240at 3974.623 kb on + strand, within PS417_18240at 3974.624 kb on - strand, within PS417_18240at 3974.624 kb on - strand, within PS417_18240at 3974.800 kb on + strand, within PS417_18240at 3974.801 kb on - strand, within PS417_18240at 3974.801 kb on - strand, within PS417_18240at 3974.830 kb on + strand, within PS417_18240at 3974.831 kb on - strand, within PS417_18240at 3974.831 kb on - strand, within PS417_18240at 3974.935 kb on + strand, within PS417_18240at 3974.935 kb on + strand, within PS417_18240at 3974.936 kb on - strand, within PS417_18240at 3974.954 kb on + strand, within PS417_18240at 3975.016 kb on + strandat 3975.183 kb on - strand, within PS417_18245

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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3,972,788 - +0.8
3,972,801 + PS417_18230 0.42 +0.0
3,972,801 + PS417_18230 0.42 -0.4
3,972,820 + PS417_18230 0.43 -1.9
3,972,820 + PS417_18230 0.43 -0.6
3,972,964 + PS417_18230 0.52 -0.3
3,972,964 + PS417_18230 0.52 -0.2
3,972,965 - PS417_18230 0.52 -0.3
3,972,965 - PS417_18230 0.52 -0.2
3,973,228 + PS417_18230 0.70 -1.2
3,973,229 - PS417_18230 0.70 -0.5
3,973,336 + PS417_18230 0.77 +0.2
3,973,393 + PS417_18230 0.81 +0.2
3,973,489 + PS417_18230 0.87 +0.1
3,973,490 - PS417_18230 0.87 -0.1
3,973,618 + +0.0
3,973,733 - -0.5
3,973,932 + PS417_18235 0.29 -0.8
3,974,016 - PS417_18235 0.43 -0.2
3,974,241 - PS417_18235 0.81 +0.2
3,974,457 + -0.2
3,974,477 + PS417_18240 0.12 -0.2
3,974,477 + PS417_18240 0.12 +0.3
3,974,507 - PS417_18240 0.17 +0.1
3,974,615 - PS417_18240 0.33 -0.6
3,974,623 + PS417_18240 0.34 -0.6
3,974,623 + PS417_18240 0.34 -2.1
3,974,624 - PS417_18240 0.35 +1.1
3,974,624 - PS417_18240 0.35 -0.5
3,974,800 + PS417_18240 0.61 +0.4
3,974,801 - PS417_18240 0.61 +0.0
3,974,801 - PS417_18240 0.61 -0.0
3,974,830 + PS417_18240 0.66 -0.8
3,974,831 - PS417_18240 0.66 -0.2
3,974,831 - PS417_18240 0.66 -1.2
3,974,935 + PS417_18240 0.81 -0.5
3,974,935 + PS417_18240 0.81 -0.8
3,974,936 - PS417_18240 0.82 +0.2
3,974,954 + PS417_18240 0.84 -0.2
3,975,016 + +1.1
3,975,183 - PS417_18245 0.10 +0.9

Or see this region's nucleotide sequence