Strain Fitness in Pseudomonas simiae WCS417 around PS417_08130

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08125 and PS417_08130 are separated by 9 nucleotidesPS417_08130 and PS417_08135 are separated by 28 nucleotides PS417_08125: PS417_08125 - prephenate dehydratase, at 1,779,063 to 1,780,157 _08125 PS417_08130: PS417_08130 - aspartate aminotransferase, at 1,780,167 to 1,781,279 _08130 PS417_08135: PS417_08135 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,781,308 to 1,783,518 _08135 Position (kb) 1780 1781 1782Strain fitness (log2 ratio) -2 -1 0 1at 1779.643 kb on - strand, within PS417_08125at 1780.163 kb on + strandat 1780.175 kb on + strandat 1780.221 kb on + strandat 1780.222 kb on - strandat 1780.764 kb on + strand, within PS417_08130at 1780.764 kb on + strand, within PS417_08130at 1780.764 kb on + strand, within PS417_08130at 1780.860 kb on + strand, within PS417_08130at 1781.184 kb on + strandat 1781.211 kb on - strandat 1781.211 kb on - strandat 1781.307 kb on + strandat 1781.307 kb on + strandat 1781.307 kb on + strandat 1781.308 kb on - strandat 1781.827 kb on - strand, within PS417_08135at 1781.919 kb on + strand, within PS417_08135at 1782.113 kb on + strand, within PS417_08135at 1782.113 kb on + strand, within PS417_08135at 1782.182 kb on - strand, within PS417_08135

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,779,643 - PS417_08125 0.53 -1.8
1,780,163 + +0.2
1,780,175 + +0.7
1,780,221 + +0.1
1,780,222 - -1.6
1,780,764 + PS417_08130 0.54 -1.0
1,780,764 + PS417_08130 0.54 -0.7
1,780,764 + PS417_08130 0.54 +0.3
1,780,860 + PS417_08130 0.62 -0.5
1,781,184 + -1.9
1,781,211 - +0.4
1,781,211 - -0.7
1,781,307 + -0.2
1,781,307 + -0.8
1,781,307 + -0.5
1,781,308 - -0.1
1,781,827 - PS417_08135 0.23 -0.9
1,781,919 + PS417_08135 0.28 -0.6
1,782,113 + PS417_08135 0.36 -1.1
1,782,113 + PS417_08135 0.36 -1.6
1,782,182 - PS417_08135 0.40 +0.7

Or see this region's nucleotide sequence