Strain Fitness in Pseudomonas simiae WCS417 around PS417_07360

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07350 and PS417_07355 are separated by 112 nucleotidesPS417_07355 and PS417_07360 overlap by 26 nucleotidesPS417_07360 and PS417_07365 are separated by 343 nucleotides PS417_07350: PS417_07350 - carbonic anhydrase, at 1,619,824 to 1,620,456 _07350 PS417_07355: PS417_07355 - transcriptional regulator, at 1,620,569 to 1,621,435 _07355 PS417_07360: PS417_07360 - ArtI protein, at 1,621,410 to 1,622,183 _07360 PS417_07365: PS417_07365 - glutamine synthetase, at 1,622,527 to 1,623,897 _07365 Position (kb) 1621 1622 1623Strain fitness (log2 ratio) -2 -1 0 1at 1620.510 kb on - strandat 1620.552 kb on + strandat 1620.553 kb on - strandat 1620.758 kb on + strand, within PS417_07355at 1620.758 kb on + strand, within PS417_07355at 1620.758 kb on + strand, within PS417_07355at 1620.758 kb on + strand, within PS417_07355at 1620.758 kb on + strand, within PS417_07355at 1620.759 kb on - strand, within PS417_07355at 1620.759 kb on - strand, within PS417_07355at 1621.010 kb on - strand, within PS417_07355at 1621.161 kb on - strand, within PS417_07355at 1621.172 kb on + strand, within PS417_07355at 1621.172 kb on + strand, within PS417_07355at 1621.173 kb on - strand, within PS417_07355at 1621.192 kb on - strand, within PS417_07355at 1621.448 kb on - strandat 1621.540 kb on + strand, within PS417_07360at 1621.540 kb on + strand, within PS417_07360at 1622.020 kb on + strand, within PS417_07360at 1622.021 kb on - strand, within PS417_07360at 1622.021 kb on - strand, within PS417_07360at 1622.048 kb on - strand, within PS417_07360at 1622.048 kb on - strand, within PS417_07360at 1622.221 kb on - strandat 1622.300 kb on - strandat 1622.339 kb on - strandat 1622.460 kb on - strandat 1622.460 kb on - strandat 1622.511 kb on - strandat 1622.514 kb on + strandat 1622.514 kb on + strandat 1622.514 kb on + strandat 1622.514 kb on + strandat 1622.514 kb on + strandat 1622.515 kb on - strandat 1622.668 kb on + strand, within PS417_07365at 1622.668 kb on + strand, within PS417_07365at 1622.968 kb on + strand, within PS417_07365at 1622.968 kb on + strand, within PS417_07365at 1622.969 kb on - strand, within PS417_07365at 1622.969 kb on - strand, within PS417_07365at 1622.969 kb on - strand, within PS417_07365at 1623.178 kb on - strand, within PS417_07365

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,620,510 - +0.4
1,620,552 + -1.0
1,620,553 - +0.9
1,620,758 + PS417_07355 0.22 -1.8
1,620,758 + PS417_07355 0.22 -0.2
1,620,758 + PS417_07355 0.22 +1.0
1,620,758 + PS417_07355 0.22 -0.3
1,620,758 + PS417_07355 0.22 -0.2
1,620,759 - PS417_07355 0.22 -0.1
1,620,759 - PS417_07355 0.22 +0.1
1,621,010 - PS417_07355 0.51 -0.3
1,621,161 - PS417_07355 0.68 -1.1
1,621,172 + PS417_07355 0.70 -0.8
1,621,172 + PS417_07355 0.70 +0.5
1,621,173 - PS417_07355 0.70 +0.1
1,621,192 - PS417_07355 0.72 +0.1
1,621,448 - +0.2
1,621,540 + PS417_07360 0.17 +0.6
1,621,540 + PS417_07360 0.17 +0.2
1,622,020 + PS417_07360 0.79 +0.2
1,622,021 - PS417_07360 0.79 +0.2
1,622,021 - PS417_07360 0.79 -0.9
1,622,048 - PS417_07360 0.82 -0.5
1,622,048 - PS417_07360 0.82 -0.0
1,622,221 - +0.6
1,622,300 - +1.7
1,622,339 - -0.9
1,622,460 - -0.2
1,622,460 - +0.2
1,622,511 - -0.2
1,622,514 + +0.6
1,622,514 + -0.4
1,622,514 + +0.7
1,622,514 + -0.6
1,622,514 + -0.0
1,622,515 - -1.3
1,622,668 + PS417_07365 0.10 +0.2
1,622,668 + PS417_07365 0.10 +0.0
1,622,968 + PS417_07365 0.32 +1.2
1,622,968 + PS417_07365 0.32 -1.0
1,622,969 - PS417_07365 0.32 +1.7
1,622,969 - PS417_07365 0.32 -0.2
1,622,969 - PS417_07365 0.32 -0.1
1,623,178 - PS417_07365 0.47 -0.5

Or see this region's nucleotide sequence