Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3969

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3968 and Echvi_3969 overlap by 4 nucleotidesEchvi_3969 and Echvi_3970 are separated by 430 nucleotides Echvi_3968: Echvi_3968 - Domain of Unknown Function (DUF1080)., at 4,756,818 to 4,757,426 _3968 Echvi_3969: Echvi_3969 - Domain of Unknown Function (DUF1080)., at 4,757,423 to 4,758,202 _3969 Echvi_3970: Echvi_3970 - hypothetical protein, at 4,758,633 to 4,759,163 _3970 Position (kb) 4757 4758 4759Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4756.704 kb on - strandat 4756.705 kb on + strandat 4756.706 kb on - strandat 4756.733 kb on - strandat 4756.803 kb on + strandat 4756.812 kb on + strandat 4756.813 kb on - strandat 4756.835 kb on + strandat 4756.856 kb on + strandat 4756.889 kb on + strand, within Echvi_3968at 4756.974 kb on + strand, within Echvi_3968at 4757.068 kb on + strand, within Echvi_3968at 4757.069 kb on - strand, within Echvi_3968at 4757.081 kb on + strand, within Echvi_3968at 4757.081 kb on + strand, within Echvi_3968at 4757.101 kb on - strand, within Echvi_3968at 4757.106 kb on + strand, within Echvi_3968at 4757.107 kb on - strand, within Echvi_3968at 4757.107 kb on - strand, within Echvi_3968at 4757.107 kb on - strand, within Echvi_3968at 4757.127 kb on - strand, within Echvi_3968at 4757.196 kb on + strand, within Echvi_3968at 4757.197 kb on - strand, within Echvi_3968at 4757.210 kb on + strand, within Echvi_3968at 4757.213 kb on - strand, within Echvi_3968at 4757.268 kb on + strand, within Echvi_3968at 4757.269 kb on - strand, within Echvi_3968at 4757.269 kb on - strand, within Echvi_3968at 4757.269 kb on - strand, within Echvi_3968at 4757.271 kb on + strand, within Echvi_3968at 4757.272 kb on - strand, within Echvi_3968at 4757.272 kb on - strand, within Echvi_3968at 4757.272 kb on - strand, within Echvi_3968at 4757.305 kb on + strand, within Echvi_3968at 4757.306 kb on - strand, within Echvi_3968at 4757.310 kb on - strand, within Echvi_3968at 4757.375 kb on + strandat 4757.382 kb on + strandat 4757.385 kb on + strandat 4757.386 kb on - strandat 4757.386 kb on - strandat 4757.386 kb on - strandat 4757.390 kb on + strandat 4757.415 kb on + strandat 4757.419 kb on + strandat 4757.420 kb on - strandat 4757.420 kb on - strandat 4757.420 kb on - strandat 4757.420 kb on - strandat 4757.451 kb on + strandat 4757.451 kb on + strandat 4757.452 kb on - strandat 4757.590 kb on + strand, within Echvi_3969at 4757.596 kb on + strand, within Echvi_3969at 4757.596 kb on + strand, within Echvi_3969at 4757.597 kb on - strand, within Echvi_3969at 4757.601 kb on + strand, within Echvi_3969at 4757.602 kb on - strand, within Echvi_3969at 4757.604 kb on + strand, within Echvi_3969at 4757.605 kb on - strand, within Echvi_3969at 4757.605 kb on - strand, within Echvi_3969at 4757.641 kb on + strand, within Echvi_3969at 4757.687 kb on - strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.726 kb on + strand, within Echvi_3969at 4757.764 kb on - strand, within Echvi_3969at 4757.776 kb on + strand, within Echvi_3969at 4757.779 kb on + strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.781 kb on + strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.798 kb on - strand, within Echvi_3969at 4757.812 kb on + strand, within Echvi_3969at 4757.812 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.818 kb on - strand, within Echvi_3969at 4757.822 kb on + strand, within Echvi_3969at 4757.822 kb on + strand, within Echvi_3969at 4757.823 kb on - strand, within Echvi_3969at 4757.823 kb on - strand, within Echvi_3969at 4757.824 kb on + strand, within Echvi_3969at 4757.825 kb on - strand, within Echvi_3969at 4757.846 kb on + strand, within Echvi_3969at 4757.938 kb on + strand, within Echvi_3969at 4757.939 kb on - strand, within Echvi_3969at 4757.939 kb on - strand, within Echvi_3969at 4757.944 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.989 kb on - strand, within Echvi_3969at 4757.989 kb on - strand, within Echvi_3969at 4758.058 kb on + strand, within Echvi_3969at 4758.058 kb on + strand, within Echvi_3969at 4758.064 kb on + strand, within Echvi_3969at 4758.065 kb on - strand, within Echvi_3969at 4758.220 kb on - strandat 4758.225 kb on - strandat 4758.225 kb on - strandat 4758.243 kb on + strandat 4758.253 kb on + strandat 4758.274 kb on + strandat 4758.413 kb on + strandat 4758.443 kb on + strandat 4758.512 kb on + strandat 4758.536 kb on + strandat 4758.546 kb on + strandat 4758.549 kb on + strandat 4758.550 kb on - strandat 4758.653 kb on - strandat 4758.661 kb on + strandat 4758.661 kb on + strandat 4758.661 kb on + strandat 4758.662 kb on - strandat 4758.754 kb on + strand, within Echvi_3970at 4758.867 kb on + strand, within Echvi_3970at 4758.894 kb on + strand, within Echvi_3970at 4758.894 kb on + strand, within Echvi_3970at 4758.894 kb on + strand, within Echvi_3970at 4758.895 kb on - strand, within Echvi_3970at 4758.897 kb on - strand, within Echvi_3970at 4758.897 kb on - strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.906 kb on - strand, within Echvi_3970at 4758.906 kb on - strand, within Echvi_3970at 4758.912 kb on - strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.928 kb on - strand, within Echvi_3970at 4758.928 kb on - strand, within Echvi_3970at 4758.928 kb on - strand, within Echvi_3970at 4758.929 kb on + strand, within Echvi_3970at 4758.929 kb on + strand, within Echvi_3970at 4758.929 kb on + strand, within Echvi_3970at 4758.930 kb on - strand, within Echvi_3970at 4758.957 kb on - strand, within Echvi_3970at 4758.958 kb on + strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.967 kb on + strand, within Echvi_3970at 4758.986 kb on - strand, within Echvi_3970at 4758.986 kb on - strand, within Echvi_3970at 4759.068 kb on - strand, within Echvi_3970at 4759.086 kb on - strand, within Echvi_3970

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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4,756,704 - -1.5
4,756,705 + -0.1
4,756,706 - -0.0
4,756,733 - -0.3
4,756,803 + +0.2
4,756,812 + +0.6
4,756,813 - +0.3
4,756,835 + +0.8
4,756,856 + +0.4
4,756,889 + Echvi_3968 0.12 +0.2
4,756,974 + Echvi_3968 0.26 -1.1
4,757,068 + Echvi_3968 0.41 -0.5
4,757,069 - Echvi_3968 0.41 +0.7
4,757,081 + Echvi_3968 0.43 +0.8
4,757,081 + Echvi_3968 0.43 +0.3
4,757,101 - Echvi_3968 0.46 -0.7
4,757,106 + Echvi_3968 0.47 +0.1
4,757,107 - Echvi_3968 0.47 -1.4
4,757,107 - Echvi_3968 0.47 +0.3
4,757,107 - Echvi_3968 0.47 +0.2
4,757,127 - Echvi_3968 0.51 +1.2
4,757,196 + Echvi_3968 0.62 +2.9
4,757,197 - Echvi_3968 0.62 +0.6
4,757,210 + Echvi_3968 0.64 -0.3
4,757,213 - Echvi_3968 0.65 -0.4
4,757,268 + Echvi_3968 0.74 +0.6
4,757,269 - Echvi_3968 0.74 -0.5
4,757,269 - Echvi_3968 0.74 -1.3
4,757,269 - Echvi_3968 0.74 -0.4
4,757,271 + Echvi_3968 0.74 +0.0
4,757,272 - Echvi_3968 0.75 +0.0
4,757,272 - Echvi_3968 0.75 +0.9
4,757,272 - Echvi_3968 0.75 +0.7
4,757,305 + Echvi_3968 0.80 -0.3
4,757,306 - Echvi_3968 0.80 +1.6
4,757,310 - Echvi_3968 0.81 +1.1
4,757,375 + -0.9
4,757,382 + -0.0
4,757,385 + -2.6
4,757,386 - -0.4
4,757,386 - -0.3
4,757,386 - -0.1
4,757,390 + +0.6
4,757,415 + -0.1
4,757,419 + -0.5
4,757,420 - +0.7
4,757,420 - -0.3
4,757,420 - -0.2
4,757,420 - +1.2
4,757,451 + -0.3
4,757,451 + -1.1
4,757,452 - -0.4
4,757,590 + Echvi_3969 0.21 +0.4
4,757,596 + Echvi_3969 0.22 -0.2
4,757,596 + Echvi_3969 0.22 +0.8
4,757,597 - Echvi_3969 0.22 +0.4
4,757,601 + Echvi_3969 0.23 +0.9
4,757,602 - Echvi_3969 0.23 -0.4
4,757,604 + Echvi_3969 0.23 -0.6
4,757,605 - Echvi_3969 0.23 +0.1
4,757,605 - Echvi_3969 0.23 +1.1
4,757,641 + Echvi_3969 0.28 +1.0
4,757,687 - Echvi_3969 0.34 -0.1
4,757,688 + Echvi_3969 0.34 +0.8
4,757,688 + Echvi_3969 0.34 -0.1
4,757,688 + Echvi_3969 0.34 +0.2
4,757,688 + Echvi_3969 0.34 +0.8
4,757,688 + Echvi_3969 0.34 +0.2
4,757,688 + Echvi_3969 0.34 -2.6
4,757,688 + Echvi_3969 0.34 +0.6
4,757,688 + Echvi_3969 0.34 -0.2
4,757,688 + Echvi_3969 0.34 +1.0
4,757,688 + Echvi_3969 0.34 -1.7
4,757,688 + Echvi_3969 0.34 -0.9
4,757,688 + Echvi_3969 0.34 +1.0
4,757,688 + Echvi_3969 0.34 -0.3
4,757,688 + Echvi_3969 0.34 +0.2
4,757,688 + Echvi_3969 0.34 +0.1
4,757,688 + Echvi_3969 0.34 -0.5
4,757,689 - Echvi_3969 0.34 -0.4
4,757,689 - Echvi_3969 0.34 +1.3
4,757,689 - Echvi_3969 0.34 +1.0
4,757,689 - Echvi_3969 0.34 +1.6
4,757,689 - Echvi_3969 0.34 +0.3
4,757,689 - Echvi_3969 0.34 -0.8
4,757,689 - Echvi_3969 0.34 +1.2
4,757,726 + Echvi_3969 0.39 +0.8
4,757,764 - Echvi_3969 0.44 +0.2
4,757,776 + Echvi_3969 0.45 -2.1
4,757,779 + Echvi_3969 0.46 +0.2
4,757,780 - Echvi_3969 0.46 -0.7
4,757,780 - Echvi_3969 0.46 +0.5
4,757,780 - Echvi_3969 0.46 -0.1
4,757,780 - Echvi_3969 0.46 -0.2
4,757,781 + Echvi_3969 0.46 -0.6
4,757,782 - Echvi_3969 0.46 +0.3
4,757,782 - Echvi_3969 0.46 +0.5
4,757,782 - Echvi_3969 0.46 +0.2
4,757,798 - Echvi_3969 0.48 +0.0
4,757,812 + Echvi_3969 0.50 -0.0
4,757,812 + Echvi_3969 0.50 -0.1
4,757,817 + Echvi_3969 0.51 -0.2
4,757,817 + Echvi_3969 0.51 +0.5
4,757,817 + Echvi_3969 0.51 -0.3
4,757,818 - Echvi_3969 0.51 +0.1
4,757,822 + Echvi_3969 0.51 +1.8
4,757,822 + Echvi_3969 0.51 -2.0
4,757,823 - Echvi_3969 0.51 +0.3
4,757,823 - Echvi_3969 0.51 -0.3
4,757,824 + Echvi_3969 0.51 +0.4
4,757,825 - Echvi_3969 0.52 +0.3
4,757,846 + Echvi_3969 0.54 +0.6
4,757,938 + Echvi_3969 0.66 -0.6
4,757,939 - Echvi_3969 0.66 +0.4
4,757,939 - Echvi_3969 0.66 +1.4
4,757,944 + Echvi_3969 0.67 +1.2
4,757,988 + Echvi_3969 0.72 -0.6
4,757,988 + Echvi_3969 0.72 +0.2
4,757,988 + Echvi_3969 0.72 +1.0
4,757,988 + Echvi_3969 0.72 +0.7
4,757,989 - Echvi_3969 0.73 +0.9
4,757,989 - Echvi_3969 0.73 -0.6
4,758,058 + Echvi_3969 0.81 +0.2
4,758,058 + Echvi_3969 0.81 -0.3
4,758,064 + Echvi_3969 0.82 +1.6
4,758,065 - Echvi_3969 0.82 +0.3
4,758,220 - +0.6
4,758,225 - -0.4
4,758,225 - -0.6
4,758,243 + -0.4
4,758,253 + +0.2
4,758,274 + +1.0
4,758,413 + +1.6
4,758,443 + -0.4
4,758,512 + -0.2
4,758,536 + -1.1
4,758,546 + -1.0
4,758,549 + -0.4
4,758,550 - +0.3
4,758,653 - +0.9
4,758,661 + +0.1
4,758,661 + +0.9
4,758,661 + -0.3
4,758,662 - -0.5
4,758,754 + Echvi_3970 0.23 -0.7
4,758,867 + Echvi_3970 0.44 -1.6
4,758,894 + Echvi_3970 0.49 +1.6
4,758,894 + Echvi_3970 0.49 -0.4
4,758,894 + Echvi_3970 0.49 +0.3
4,758,895 - Echvi_3970 0.49 +0.7
4,758,897 - Echvi_3970 0.50 +0.0
4,758,897 - Echvi_3970 0.50 +0.6
4,758,905 + Echvi_3970 0.51 -0.1
4,758,905 + Echvi_3970 0.51 +0.2
4,758,905 + Echvi_3970 0.51 -0.2
4,758,905 + Echvi_3970 0.51 +2.6
4,758,906 - Echvi_3970 0.51 +0.0
4,758,906 - Echvi_3970 0.51 -0.1
4,758,912 - Echvi_3970 0.53 -1.6
4,758,927 + Echvi_3970 0.55 +1.6
4,758,927 + Echvi_3970 0.55 -0.8
4,758,927 + Echvi_3970 0.55 +1.6
4,758,927 + Echvi_3970 0.55 +0.5
4,758,927 + Echvi_3970 0.55 -0.7
4,758,927 + Echvi_3970 0.55 -0.7
4,758,928 - Echvi_3970 0.56 +2.1
4,758,928 - Echvi_3970 0.56 +0.6
4,758,928 - Echvi_3970 0.56 +0.8
4,758,929 + Echvi_3970 0.56 -0.5
4,758,929 + Echvi_3970 0.56 -0.5
4,758,929 + Echvi_3970 0.56 -3.3
4,758,930 - Echvi_3970 0.56 -1.2
4,758,957 - Echvi_3970 0.61 -0.6
4,758,958 + Echvi_3970 0.61 -0.3
4,758,959 - Echvi_3970 0.61 +0.1
4,758,959 - Echvi_3970 0.61 -0.1
4,758,959 - Echvi_3970 0.61 +0.7
4,758,959 - Echvi_3970 0.61 +0.0
4,758,967 + Echvi_3970 0.63 -0.6
4,758,986 - Echvi_3970 0.66 +1.0
4,758,986 - Echvi_3970 0.66 +0.0
4,759,068 - Echvi_3970 0.82 +0.1
4,759,086 - Echvi_3970 0.85 -0.6

Or see this region's nucleotide sequence