Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0503 and Echvi_0504 are separated by 321 nucleotides Echvi_0504 and Echvi_0505 are separated by 4 nucleotides Echvi_0505 and Echvi_0506 overlap by 10 nucleotides
Echvi_0503: Echvi_0503 - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) <small>(from data)</small>, at 560,214 to 560,918
_0503
Echvi_0504: Echvi_0504 - Signal transduction histidine kinase, at 561,240 to 564,401
_0504
Echvi_0505: Echvi_0505 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 564,406 to 564,996
_0505
Echvi_0506: Echvi_0506 - Predicted neuraminidase (sialidase), at 564,987 to 566,087
_0506
Position (kb) 561
562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 560.318 kb on + strand, within Echvi_0503 at 560.323 kb on + strand, within Echvi_0503 at 560.324 kb on - strand, within Echvi_0503 at 560.337 kb on + strand, within Echvi_0503 at 560.357 kb on + strand, within Echvi_0503 at 560.360 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.363 kb on - strand, within Echvi_0503 at 560.427 kb on + strand, within Echvi_0503 at 560.428 kb on - strand, within Echvi_0503 at 560.438 kb on - strand, within Echvi_0503 at 560.771 kb on - strand, within Echvi_0503 at 560.873 kb on + strand at 560.885 kb on - strand at 560.899 kb on - strand at 560.899 kb on - strand at 560.928 kb on - strand at 560.956 kb on - strand at 560.958 kb on - strand at 560.960 kb on - strand at 560.974 kb on - strand at 561.042 kb on + strand at 561.042 kb on + strand at 561.082 kb on - strand at 561.112 kb on - strand at 561.125 kb on + strand at 561.126 kb on - strand at 561.126 kb on - strand at 561.127 kb on + strand at 561.128 kb on - strand at 561.131 kb on + strand at 561.134 kb on - strand at 561.190 kb on + strand at 561.190 kb on + strand at 561.200 kb on + strand at 561.204 kb on + strand at 561.261 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.396 kb on + strand at 561.397 kb on - strand at 561.400 kb on + strand at 561.400 kb on + strand at 561.400 kb on + strand at 561.400 kb on + strand at 561.401 kb on - strand at 561.401 kb on - strand at 561.401 kb on - strand at 561.456 kb on + strand at 561.456 kb on + strand at 561.457 kb on - strand at 561.457 kb on - strand at 561.531 kb on - strand at 561.534 kb on - strand at 561.570 kb on + strand, within Echvi_0504 at 561.600 kb on + strand, within Echvi_0504 at 561.600 kb on + strand, within Echvi_0504 at 561.600 kb on + strand, within Echvi_0504 at 561.601 kb on - strand, within Echvi_0504 at 561.647 kb on - strand, within Echvi_0504 at 561.647 kb on - strand, within Echvi_0504 at 561.784 kb on + strand, within Echvi_0504 at 561.922 kb on - strand, within Echvi_0504 at 561.922 kb on - strand, within Echvi_0504 at 562.096 kb on + strand, within Echvi_0504 at 562.145 kb on + strand, within Echvi_0504 at 562.184 kb on + strand, within Echvi_0504 at 562.202 kb on + strand, within Echvi_0504 at 562.202 kb on + strand, within Echvi_0504 at 562.203 kb on - strand, within Echvi_0504 at 562.203 kb on - strand, within Echvi_0504 at 562.206 kb on + strand, within Echvi_0504 at 562.206 kb on + strand, within Echvi_0504 at 562.206 kb on + strand, within Echvi_0504 at 562.207 kb on - strand, within Echvi_0504 at 562.207 kb on - strand, within Echvi_0504 at 562.251 kb on + strand, within Echvi_0504 at 562.252 kb on - strand, within Echvi_0504 at 562.289 kb on + strand, within Echvi_0504 at 562.296 kb on - strand, within Echvi_0504 at 562.332 kb on + strand, within Echvi_0504 at 562.332 kb on + strand, within Echvi_0504 at 562.332 kb on + strand, within Echvi_0504 at 562.333 kb on - strand, within Echvi_0504 at 562.333 kb on - strand, within Echvi_0504 at 562.335 kb on + strand, within Echvi_0504 at 562.336 kb on - strand, within Echvi_0504 at 562.336 kb on - strand, within Echvi_0504 at 562.392 kb on + strand, within Echvi_0504 at 562.393 kb on - strand, within Echvi_0504 at 562.440 kb on + strand, within Echvi_0504 at 562.440 kb on + strand, within Echvi_0504 at 562.441 kb on - strand, within Echvi_0504 at 562.441 kb on - strand, within Echvi_0504 at 562.441 kb on - strand, within Echvi_0504 at 562.472 kb on - strand, within Echvi_0504 at 562.661 kb on - strand, within Echvi_0504 at 562.681 kb on + strand, within Echvi_0504 at 562.682 kb on - strand, within Echvi_0504 at 562.682 kb on - strand, within Echvi_0504 at 562.775 kb on + strand, within Echvi_0504 at 562.807 kb on + strand, within Echvi_0504 at 562.836 kb on - strand, within Echvi_0504 at 562.856 kb on + strand, within Echvi_0504 at 562.871 kb on + strand, within Echvi_0504 at 562.871 kb on + strand, within Echvi_0504 at 562.895 kb on + strand, within Echvi_0504 at 562.895 kb on + strand, within Echvi_0504 at 562.898 kb on + strand, within Echvi_0504 at 562.991 kb on + strand, within Echvi_0504 at 563.027 kb on + strand, within Echvi_0504 at 563.028 kb on - strand, within Echvi_0504 at 563.131 kb on - strand, within Echvi_0504 at 563.160 kb on + strand, within Echvi_0504 at 563.160 kb on + strand, within Echvi_0504 at 563.160 kb on + strand at 563.181 kb on + strand, within Echvi_0504 at 563.181 kb on + strand, within Echvi_0504 at 563.182 kb on - strand, within Echvi_0504 at 563.182 kb on - strand, within Echvi_0504 at 563.184 kb on - strand, within Echvi_0504 at 563.233 kb on - strand, within Echvi_0504 at 563.261 kb on + strand, within Echvi_0504 at 563.304 kb on - strand, within Echvi_0504 at 563.339 kb on - strand, within Echvi_0504 at 563.358 kb on + strand, within Echvi_0504 at 563.359 kb on - strand, within Echvi_0504 at 563.438 kb on + strand, within Echvi_0504 at 563.438 kb on + strand, within Echvi_0504 at 563.461 kb on + strand, within Echvi_0504 at 563.461 kb on + strand, within Echvi_0504 at 563.474 kb on + strand, within Echvi_0504 at 563.474 kb on + strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.514 kb on + strand, within Echvi_0504 at 563.514 kb on + strand, within Echvi_0504 at 563.538 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.541 kb on - strand, within Echvi_0504 at 563.541 kb on - strand, within Echvi_0504 at 563.541 kb on - strand, within Echvi_0504 at 563.606 kb on + strand, within Echvi_0504 at 563.606 kb on + strand, within Echvi_0504 at 563.606 kb on + strand, within Echvi_0504 at 563.607 kb on - strand, within Echvi_0504 at 563.625 kb on + strand, within Echvi_0504 at 563.688 kb on + strand, within Echvi_0504 at 563.689 kb on - strand, within Echvi_0504 at 563.982 kb on + strand, within Echvi_0504 at 563.983 kb on - strand, within Echvi_0504 at 564.014 kb on + strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.047 kb on - strand, within Echvi_0504 at 564.085 kb on - strand at 564.086 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.355 kb on + strand at 564.355 kb on + strand at 564.356 kb on - strand at 564.356 kb on - strand at 564.386 kb on + strand at 564.399 kb on + strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.425 kb on + strand at 564.426 kb on - strand at 564.434 kb on + strand at 564.435 kb on - strand at 564.473 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.580 kb on - strand, within Echvi_0505 at 564.592 kb on - strand, within Echvi_0505 at 564.727 kb on + strand, within Echvi_0505 at 564.825 kb on + strand, within Echvi_0505 at 564.899 kb on - strand, within Echvi_0505 at 564.957 kb on + strand at 564.957 kb on + strand at 564.958 kb on - strand at 564.974 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.003 kb on - strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.045 kb on + strand at 565.052 kb on + strand at 565.053 kb on - strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.218 kb on - strand, within Echvi_0506 at 565.218 kb on - strand, within Echvi_0506 at 565.219 kb on + strand, within Echvi_0506 at 565.220 kb on - strand, within Echvi_0506 at 565.227 kb on + strand, within Echvi_0506 at 565.279 kb on - strand, within Echvi_0506 at 565.310 kb on + strand, within Echvi_0506 at 565.311 kb on - strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.399 kb on - strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 560,318 + Echvi_0503 0.15 +0.7 560,323 + Echvi_0503 0.15 -0.9 560,324 - Echvi_0503 0.16 -0.6 560,337 + Echvi_0503 0.17 -0.6 560,357 + Echvi_0503 0.20 +0.2 560,360 + Echvi_0503 0.21 +0.1 560,362 + Echvi_0503 0.21 -0.0 560,362 + Echvi_0503 0.21 -0.2 560,362 + Echvi_0503 0.21 -1.2 560,362 + Echvi_0503 0.21 +0.5 560,363 - Echvi_0503 0.21 -2.8 560,427 + Echvi_0503 0.30 +0.3 560,428 - Echvi_0503 0.30 -0.4 560,438 - Echvi_0503 0.32 +2.7 560,771 - Echvi_0503 0.79 +1.1 560,873 + -1.2 560,885 - -0.9 560,899 - +1.4 560,899 - -0.6 560,928 - -0.6 560,956 - +0.2 560,958 - -0.6 560,960 - -0.4 560,974 - -0.0 561,042 + +0.0 561,042 + -0.0 561,082 - +0.1 561,112 - -0.6 561,125 + +1.3 561,126 - -0.2 561,126 - +0.5 561,127 + -0.2 561,128 - +0.7 561,131 + -0.4 561,134 - -0.5 561,190 + +0.8 561,190 + +1.2 561,200 + +0.1 561,204 + +0.5 561,261 + +0.4 561,313 + -0.9 561,313 + -0.4 561,313 + -0.6 561,313 + +0.2 561,313 + -0.6 561,313 + -0.7 561,313 + +0.7 561,396 + -0.1 561,397 - +1.1 561,400 + +1.5 561,400 + -0.2 561,400 + -0.6 561,400 + -1.0 561,401 - -1.5 561,401 - -1.0 561,401 - +2.0 561,456 + +1.0 561,456 + +0.7 561,457 - +0.1 561,457 - -0.8 561,531 - -0.2 561,534 - -2.4 561,570 + Echvi_0504 0.10 -0.5 561,600 + Echvi_0504 0.11 +0.5 561,600 + Echvi_0504 0.11 -0.2 561,600 + Echvi_0504 0.11 -0.5 561,601 - Echvi_0504 0.11 +0.1 561,647 - Echvi_0504 0.13 -1.4 561,647 - Echvi_0504 0.13 +0.7 561,784 + Echvi_0504 0.17 +0.1 561,922 - Echvi_0504 0.22 +0.1 561,922 - Echvi_0504 0.22 +0.2 562,096 + Echvi_0504 0.27 +1.0 562,145 + Echvi_0504 0.29 +0.3 562,184 + Echvi_0504 0.30 -0.7 562,202 + Echvi_0504 0.30 +1.3 562,202 + Echvi_0504 0.30 -0.9 562,203 - Echvi_0504 0.30 +0.2 562,203 - Echvi_0504 0.30 -0.1 562,206 + Echvi_0504 0.31 -0.2 562,206 + Echvi_0504 0.31 +0.1 562,206 + Echvi_0504 0.31 -1.2 562,207 - Echvi_0504 0.31 -0.2 562,207 - Echvi_0504 0.31 -0.2 562,251 + Echvi_0504 0.32 +0.7 562,252 - Echvi_0504 0.32 -1.0 562,289 + Echvi_0504 0.33 +1.0 562,296 - Echvi_0504 0.33 +3.3 562,332 + Echvi_0504 0.35 +0.6 562,332 + Echvi_0504 0.35 -0.2 562,332 + Echvi_0504 0.35 -0.3 562,333 - Echvi_0504 0.35 +0.1 562,333 - Echvi_0504 0.35 -1.1 562,335 + Echvi_0504 0.35 +0.3 562,336 - Echvi_0504 0.35 -0.5 562,336 - Echvi_0504 0.35 -0.2 562,392 + Echvi_0504 0.36 -1.5 562,393 - Echvi_0504 0.36 +1.9 562,440 + Echvi_0504 0.38 -2.6 562,440 + Echvi_0504 0.38 -2.6 562,441 - Echvi_0504 0.38 -0.1 562,441 - Echvi_0504 0.38 +0.6 562,441 - Echvi_0504 0.38 -0.1 562,472 - Echvi_0504 0.39 -1.1 562,661 - Echvi_0504 0.45 -0.1 562,681 + Echvi_0504 0.46 -0.9 562,682 - Echvi_0504 0.46 -0.3 562,682 - Echvi_0504 0.46 +0.3 562,775 + Echvi_0504 0.49 -0.8 562,807 + Echvi_0504 0.50 -1.6 562,836 - Echvi_0504 0.50 +0.1 562,856 + Echvi_0504 0.51 -2.6 562,871 + Echvi_0504 0.52 -1.9 562,871 + Echvi_0504 0.52 +0.7 562,895 + Echvi_0504 0.52 -1.7 562,895 + Echvi_0504 0.52 -1.6 562,898 + Echvi_0504 0.52 +1.7 562,991 + Echvi_0504 0.55 -0.5 563,027 + Echvi_0504 0.57 +0.8 563,028 - Echvi_0504 0.57 +0.4 563,131 - Echvi_0504 0.60 -1.2 563,160 + Echvi_0504 0.61 -0.3 563,160 + Echvi_0504 0.61 -0.3 563,160 + +0.7 563,181 + Echvi_0504 0.61 -0.3 563,181 + Echvi_0504 0.61 +0.1 563,182 - Echvi_0504 0.61 +0.1 563,182 - Echvi_0504 0.61 -0.8 563,184 - Echvi_0504 0.61 +0.3 563,233 - Echvi_0504 0.63 -0.7 563,261 + Echvi_0504 0.64 +0.3 563,304 - Echvi_0504 0.65 +0.3 563,339 - Echvi_0504 0.66 +1.1 563,358 + Echvi_0504 0.67 +0.0 563,359 - Echvi_0504 0.67 +0.5 563,438 + Echvi_0504 0.70 -0.1 563,438 + Echvi_0504 0.70 -1.0 563,461 + Echvi_0504 0.70 -0.3 563,461 + Echvi_0504 0.70 +0.2 563,474 + Echvi_0504 0.71 -1.3 563,474 + Echvi_0504 0.71 -2.6 563,475 - Echvi_0504 0.71 +0.8 563,475 - Echvi_0504 0.71 +0.0 563,475 - Echvi_0504 0.71 -0.9 563,475 - Echvi_0504 0.71 -1.3 563,475 - Echvi_0504 0.71 -0.9 563,514 + Echvi_0504 0.72 +0.0 563,514 + Echvi_0504 0.72 -1.2 563,538 + Echvi_0504 0.73 +0.5 563,540 + Echvi_0504 0.73 -0.3 563,540 + Echvi_0504 0.73 -0.1 563,540 + Echvi_0504 0.73 -1.8 563,540 + Echvi_0504 0.73 -0.8 563,540 + Echvi_0504 0.73 -1.5 563,541 - Echvi_0504 0.73 -1.5 563,541 - Echvi_0504 0.73 -0.0 563,541 - Echvi_0504 0.73 +0.5 563,606 + Echvi_0504 0.75 -0.3 563,606 + Echvi_0504 0.75 -1.6 563,606 + Echvi_0504 0.75 +0.7 563,607 - Echvi_0504 0.75 +1.3 563,625 + Echvi_0504 0.75 +0.2 563,688 + Echvi_0504 0.77 -0.6 563,689 - Echvi_0504 0.77 -0.8 563,982 + Echvi_0504 0.87 -0.4 563,983 - Echvi_0504 0.87 -0.2 564,014 + Echvi_0504 0.88 -0.3 564,022 - Echvi_0504 0.88 +0.7 564,022 - Echvi_0504 0.88 -0.3 564,047 - Echvi_0504 0.89 +0.1 564,085 - -0.3 564,086 + -0.2 564,181 + +0.1 564,181 + -0.6 564,181 + -0.5 564,182 - -1.1 564,182 - -0.3 564,182 - +0.0 564,355 + -1.2 564,355 + -0.1 564,356 - +0.4 564,356 - -1.1 564,386 + -0.1 564,399 + +0.1 564,400 - -1.4 564,400 - +1.6 564,400 - -1.8 564,425 + -0.1 564,426 - +2.4 564,434 + -0.2 564,435 - +0.2 564,473 + Echvi_0505 0.11 -0.6 564,500 + Echvi_0505 0.16 -0.1 564,500 + Echvi_0505 0.16 -0.9 564,500 + Echvi_0505 0.16 -0.4 564,501 - Echvi_0505 0.16 -0.2 564,501 - Echvi_0505 0.16 -0.0 564,501 - Echvi_0505 0.16 -0.6 564,501 - Echvi_0505 0.16 +0.4 564,501 - Echvi_0505 0.16 +1.6 564,580 - Echvi_0505 0.29 +0.9 564,592 - Echvi_0505 0.31 -0.3 564,727 + Echvi_0505 0.54 -0.6 564,825 + Echvi_0505 0.71 +1.0 564,899 - Echvi_0505 0.83 +0.4 564,957 + +0.2 564,957 + -0.4 564,958 - +0.1 564,974 + -0.6 564,988 + -0.5 564,988 + +0.0 564,988 + +0.5 564,999 + +0.5 564,999 + -0.9 564,999 + -0.7 565,000 - +0.2 565,000 - -0.1 565,003 - -0.2 565,043 + +1.0 565,043 + +0.6 565,043 + +0.2 565,045 + -0.2 565,052 + +0.4 565,053 - -0.7 565,056 + -1.9 565,056 + +0.9 565,056 + +1.2 565,218 - Echvi_0506 0.21 +1.1 565,218 - Echvi_0506 0.21 -0.6 565,219 + Echvi_0506 0.21 -1.4 565,220 - Echvi_0506 0.21 -0.8 565,227 + Echvi_0506 0.22 -1.7 565,279 - Echvi_0506 0.27 -1.1 565,310 + Echvi_0506 0.29 +0.0 565,311 - Echvi_0506 0.29 -0.3 565,398 + Echvi_0506 0.37 +0.4 565,398 + Echvi_0506 0.37 -1.6 565,399 - Echvi_0506 0.37 -0.6 565,400 + Echvi_0506 0.38 -0.9 565,400 + Echvi_0506 0.38 +0.1 565,400 + Echvi_0506 0.38 +0.0 565,400 + Echvi_0506 0.38 +0.1
Or see this region's nucleotide sequence