Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0214

Experiment: m.b. Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0213 and Echvi_0214 are separated by 540 nucleotidesEchvi_0214 and Echvi_0215 overlap by 17 nucleotidesEchvi_0215 and Echvi_0216 overlap by 4 nucleotides Echvi_0213: Echvi_0213 - hypothetical protein, at 233,060 to 233,374 _0213 Echvi_0214: Echvi_0214 - Putative transcription activator, at 233,915 to 234,568 _0214 Echvi_0215: Echvi_0215 - phosphomethylpyrimidine kinase, at 234,552 to 235,391 _0215 Echvi_0216: Echvi_0216 - thiamine-phosphate pyrophosphorylase, at 235,388 to 236,026 _0216 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2at 232.918 kb on + strandat 232.919 kb on - strandat 232.919 kb on - strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.076 kb on + strandat 233.079 kb on + strandat 233.080 kb on - strandat 233.102 kb on + strand, within Echvi_0213at 233.103 kb on - strand, within Echvi_0213at 233.103 kb on - strand, within Echvi_0213at 233.106 kb on + strand, within Echvi_0213at 233.106 kb on + strand, within Echvi_0213at 233.119 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.137 kb on - strand, within Echvi_0213at 233.155 kb on - strand, within Echvi_0213at 233.178 kb on + strand, within Echvi_0213at 233.263 kb on + strand, within Echvi_0213at 233.373 kb on - strandat 233.582 kb on - strandat 233.643 kb on + strandat 233.643 kb on + strandat 233.653 kb on - strandat 233.716 kb on + strandat 233.734 kb on - strandat 233.818 kb on + strandat 233.843 kb on + strandat 234.091 kb on - strand, within Echvi_0214at 234.091 kb on - strand, within Echvi_0214at 234.094 kb on + strand, within Echvi_0214at 234.094 kb on + strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.141 kb on + strand, within Echvi_0214at 234.142 kb on - strand, within Echvi_0214at 234.142 kb on - strand, within Echvi_0214at 234.145 kb on + strand, within Echvi_0214at 234.146 kb on - strand, within Echvi_0214at 234.163 kb on + strand, within Echvi_0214at 234.163 kb on + strand, within Echvi_0214at 234.207 kb on - strand, within Echvi_0214at 234.207 kb on - strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.330 kb on - strand, within Echvi_0214at 234.457 kb on + strand, within Echvi_0214at 234.593 kb on - strandat 234.593 kb on - strandat 234.883 kb on - strand, within Echvi_0215at 234.883 kb on - strand, within Echvi_0215at 235.143 kb on + strand, within Echvi_0215at 235.224 kb on - strand, within Echvi_0215at 235.224 kb on - strand, within Echvi_0215at 235.230 kb on + strand, within Echvi_0215at 235.241 kb on + strand, within Echvi_0215at 235.253 kb on + strand, within Echvi_0215at 235.253 kb on + strand, within Echvi_0215at 235.254 kb on - strand, within Echvi_0215at 235.369 kb on + strandat 235.369 kb on + strandat 235.369 kb on + strandat 235.382 kb on + strandat 235.522 kb on + strand, within Echvi_0216at 235.523 kb on - strand, within Echvi_0216

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
remove
232,918 + +0.7
232,919 - +0.7
232,919 - -0.3
233,050 + -0.0
233,050 + -1.3
233,050 + -0.8
233,050 + -2.0
233,076 + -0.7
233,079 + +0.1
233,080 - -1.8
233,102 + Echvi_0213 0.13 +1.5
233,103 - Echvi_0213 0.14 +0.1
233,103 - Echvi_0213 0.14 -0.8
233,106 + Echvi_0213 0.15 +0.6
233,106 + Echvi_0213 0.15 -0.3
233,119 + Echvi_0213 0.19 +1.2
233,136 + Echvi_0213 0.24 +0.6
233,136 + Echvi_0213 0.24 +0.7
233,136 + Echvi_0213 0.24 +0.9
233,137 - Echvi_0213 0.24 -0.3
233,155 - Echvi_0213 0.30 +0.4
233,178 + Echvi_0213 0.37 -1.7
233,263 + Echvi_0213 0.64 +0.6
233,373 - -0.5
233,582 - -0.9
233,643 + +0.4
233,643 + +0.2
233,653 - -0.6
233,716 + -0.6
233,734 - +0.0
233,818 + +0.3
233,843 + +1.1
234,091 - Echvi_0214 0.27 -0.5
234,091 - Echvi_0214 0.27 -1.1
234,094 + Echvi_0214 0.27 -0.9
234,094 + Echvi_0214 0.27 +1.0
234,095 - Echvi_0214 0.28 +0.1
234,095 - Echvi_0214 0.28 -0.1
234,095 - Echvi_0214 0.28 -0.8
234,141 + Echvi_0214 0.35 +0.5
234,142 - Echvi_0214 0.35 +1.0
234,142 - Echvi_0214 0.35 -0.6
234,145 + Echvi_0214 0.35 -0.4
234,146 - Echvi_0214 0.35 -0.3
234,163 + Echvi_0214 0.38 +0.1
234,163 + Echvi_0214 0.38 +0.0
234,207 - Echvi_0214 0.45 +1.3
234,207 - Echvi_0214 0.45 +0.1
234,237 + Echvi_0214 0.49 +0.3
234,237 + Echvi_0214 0.49 +0.4
234,237 + Echvi_0214 0.49 +1.0
234,237 + Echvi_0214 0.49 +0.2
234,237 + Echvi_0214 0.49 +0.7
234,238 - Echvi_0214 0.49 -1.1
234,238 - Echvi_0214 0.49 +0.0
234,238 - Echvi_0214 0.49 +1.3
234,330 - Echvi_0214 0.63 -1.1
234,457 + Echvi_0214 0.83 +2.1
234,593 - -0.3
234,593 - -1.1
234,883 - Echvi_0215 0.39 -0.5
234,883 - Echvi_0215 0.39 -0.6
235,143 + Echvi_0215 0.70 +0.2
235,224 - Echvi_0215 0.80 -1.5
235,224 - Echvi_0215 0.80 +0.9
235,230 + Echvi_0215 0.81 +1.8
235,241 + Echvi_0215 0.82 +0.7
235,253 + Echvi_0215 0.83 -0.6
235,253 + Echvi_0215 0.83 -0.3
235,254 - Echvi_0215 0.84 +0.4
235,369 + -0.4
235,369 + -0.4
235,369 + +0.2
235,382 + +0.4
235,522 + Echvi_0216 0.21 -0.2
235,523 - Echvi_0216 0.21 -0.6

Or see this region's nucleotide sequence