Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24710

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20600 and AMB_RS24710 are separated by 153 nucleotidesAMB_RS24710 and AMB_RS20610 are separated by 181 nucleotides AMB_RS20600: AMB_RS20600 - 6-phosphofructokinase, at 4,476,656 to 4,477,870 _RS20600 AMB_RS24710: AMB_RS24710 - DUF1289 domain-containing protein, at 4,478,024 to 4,478,206 _RS24710 AMB_RS20610: AMB_RS20610 - methyl-accepting chemotaxis protein, at 4,478,388 to 4,480,592 _RS20610 Position (kb) 4478 4479Strain fitness (log2 ratio) -2 -1 0 1 2at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.348 kb on - strand, within AMB_RS20600at 4477.348 kb on - strand, within AMB_RS20600at 4477.560 kb on + strand, within AMB_RS20600at 4477.560 kb on + strand, within AMB_RS20600at 4477.560 kb on + strand, within AMB_RS20600at 4477.561 kb on - strand, within AMB_RS20600at 4477.561 kb on - strand, within AMB_RS20600at 4477.561 kb on - strand, within AMB_RS20600at 4477.569 kb on + strand, within AMB_RS20600at 4477.570 kb on - strand, within AMB_RS20600at 4477.614 kb on + strand, within AMB_RS20600at 4477.614 kb on + strand, within AMB_RS20600at 4477.615 kb on - strand, within AMB_RS20600at 4477.615 kb on - strand, within AMB_RS20600at 4477.756 kb on - strandat 4477.934 kb on + strandat 4477.934 kb on + strandat 4477.934 kb on + strandat 4477.964 kb on + strandat 4477.965 kb on - strandat 4477.965 kb on - strandat 4478.138 kb on - strand, within AMB_RS24710at 4478.384 kb on - strandat 4478.545 kb on - strandat 4478.671 kb on - strand, within AMB_RS20610at 4478.871 kb on + strand, within AMB_RS20610at 4478.871 kb on + strand, within AMB_RS20610at 4478.871 kb on + strand, within AMB_RS20610at 4478.871 kb on + strand, within AMB_RS20610at 4478.871 kb on + strand, within AMB_RS20610at 4478.871 kb on + strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4478.872 kb on - strand, within AMB_RS20610at 4479.051 kb on + strand, within AMB_RS20610at 4479.051 kb on + strand, within AMB_RS20610at 4479.051 kb on + strand, within AMB_RS20610at 4479.051 kb on + strand, within AMB_RS20610at 4479.051 kb on + strand, within AMB_RS20610at 4479.052 kb on - strand, within AMB_RS20610at 4479.052 kb on - strand, within AMB_RS20610at 4479.052 kb on - strand, within AMB_RS20610at 4479.171 kb on - strand, within AMB_RS20610at 4479.171 kb on - strand, within AMB_RS20610

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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4,477,254 + AMB_RS20600 0.49 -2.7
4,477,254 + AMB_RS20600 0.49 -1.4
4,477,254 + AMB_RS20600 0.49 +0.1
4,477,254 + AMB_RS20600 0.49 -0.3
4,477,254 + AMB_RS20600 0.49 -0.4
4,477,254 + AMB_RS20600 0.49 -0.4
4,477,254 + AMB_RS20600 0.49 +2.2
4,477,254 + AMB_RS20600 0.49 +0.6
4,477,254 + AMB_RS20600 0.49 -0.4
4,477,254 + AMB_RS20600 0.49 -0.4
4,477,254 + AMB_RS20600 0.49 -0.6
4,477,255 - AMB_RS20600 0.49 -0.9
4,477,255 - AMB_RS20600 0.49 -1.7
4,477,255 - AMB_RS20600 0.49 +0.1
4,477,255 - AMB_RS20600 0.49 -1.2
4,477,255 - AMB_RS20600 0.49 +0.2
4,477,255 - AMB_RS20600 0.49 -2.4
4,477,255 - AMB_RS20600 0.49 +0.3
4,477,258 + AMB_RS20600 0.50 -0.7
4,477,258 + AMB_RS20600 0.50 -1.7
4,477,258 + AMB_RS20600 0.50 -0.7
4,477,258 + AMB_RS20600 0.50 -0.7
4,477,258 + AMB_RS20600 0.50 +0.5
4,477,258 + AMB_RS20600 0.50 -0.1
4,477,259 - AMB_RS20600 0.50 +0.8
4,477,259 - AMB_RS20600 0.50 -0.0
4,477,259 - AMB_RS20600 0.50 -2.6
4,477,259 - AMB_RS20600 0.50 -1.9
4,477,347 + AMB_RS20600 0.57 +0.1
4,477,347 + AMB_RS20600 0.57 -0.7
4,477,347 + AMB_RS20600 0.57 -0.7
4,477,348 - AMB_RS20600 0.57 -0.5
4,477,348 - AMB_RS20600 0.57 -1.5
4,477,560 + AMB_RS20600 0.74 -0.1
4,477,560 + AMB_RS20600 0.74 +0.6
4,477,560 + AMB_RS20600 0.74 -2.1
4,477,561 - AMB_RS20600 0.74 -2.3
4,477,561 - AMB_RS20600 0.74 -0.9
4,477,561 - AMB_RS20600 0.74 -0.0
4,477,569 + AMB_RS20600 0.75 +0.2
4,477,570 - AMB_RS20600 0.75 -0.7
4,477,614 + AMB_RS20600 0.79 -1.7
4,477,614 + AMB_RS20600 0.79 +0.1
4,477,615 - AMB_RS20600 0.79 -0.7
4,477,615 - AMB_RS20600 0.79 +0.4
4,477,756 - -1.4
4,477,934 + -0.5
4,477,934 + +0.1
4,477,934 + +0.3
4,477,964 + -1.0
4,477,965 - -2.3
4,477,965 - -0.8
4,478,138 - AMB_RS24710 0.62 -0.5
4,478,384 - +0.1
4,478,545 - +0.6
4,478,671 - AMB_RS20610 0.13 -1.8
4,478,871 + AMB_RS20610 0.22 -1.5
4,478,871 + AMB_RS20610 0.22 -0.9
4,478,871 + AMB_RS20610 0.22 +0.6
4,478,871 + AMB_RS20610 0.22 -1.4
4,478,871 + AMB_RS20610 0.22 -0.8
4,478,871 + AMB_RS20610 0.22 -1.9
4,478,872 - AMB_RS20610 0.22 +0.6
4,478,872 - AMB_RS20610 0.22 -0.8
4,478,872 - AMB_RS20610 0.22 +0.2
4,478,872 - AMB_RS20610 0.22 -0.4
4,478,872 - AMB_RS20610 0.22 -0.6
4,478,872 - AMB_RS20610 0.22 +0.4
4,478,872 - AMB_RS20610 0.22 -0.5
4,478,872 - AMB_RS20610 0.22 -0.7
4,479,051 + AMB_RS20610 0.30 +0.2
4,479,051 + AMB_RS20610 0.30 -0.9
4,479,051 + AMB_RS20610 0.30 -0.4
4,479,051 + AMB_RS20610 0.30 +0.4
4,479,051 + AMB_RS20610 0.30 -0.1
4,479,052 - AMB_RS20610 0.30 -0.3
4,479,052 - AMB_RS20610 0.30 -0.4
4,479,052 - AMB_RS20610 0.30 +1.2
4,479,171 - AMB_RS20610 0.36 -1.4
4,479,171 - AMB_RS20610 0.36 -0.2

Or see this region's nucleotide sequence