Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22825

Experiment: 30_an_nonmag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_3
4,924,248	+		AMB_RS22815	0.31	-0.6
4,924,346	+		AMB_RS22815	0.42	-0.4
4,924,346	+		AMB_RS22815	0.42	-0.4
4,924,346	+		AMB_RS22815	0.42	-1.1
4,924,416	+		AMB_RS22815	0.50	+0.1
4,924,416	+		AMB_RS22815	0.50	-0.6
4,924,417	-		AMB_RS22815	0.50	+0.6
4,924,417	-		AMB_RS22815	0.50	-2.2
4,924,467	-		AMB_RS22815	0.56	+0.2
4,924,799	+				-0.3
4,924,844	+				-2.7
4,924,844	+				-1.1
4,924,844	+				+0.0
4,924,845	-				-2.7
4,924,962	+		AMB_RS22820	0.33	-0.6
4,924,963	-		AMB_RS22820	0.33	-1.3
4,925,192	-				-1.7
4,925,478	+				-0.4
4,925,478	+				-0.6
4,925,478	+				-0.6
4,925,478	+				-0.2
4,925,478	+				-0.3
4,925,478	+				-0.2
4,925,496	+				-0.6
4,925,496	+				-1.0
4,925,497	-				+0.7
4,925,559	+				-1.3
4,925,559	+				+1.4
4,925,560	-				-2.0
4,925,771	+		AMB_RS22825	0.12	+2.7
4,925,771	+		AMB_RS22825	0.12	-2.4
4,925,772	-		AMB_RS22825	0.12	+1.2
4,925,961	+		AMB_RS22825	0.17	+0.1
4,925,962	-		AMB_RS22825	0.17	-2.8
4,926,483	+		AMB_RS22825	0.28	-1.8
4,926,484	-		AMB_RS22825	0.28	-0.2
4,926,484	-		AMB_RS22825	0.28	+0.4
4,926,648	+		AMB_RS22825	0.32	+0.6
4,926,649	-		AMB_RS22825	0.32	-2.1
4,926,649	-		AMB_RS22825	0.32	+0.2
4,926,649	-		AMB_RS22825	0.32	-1.1
4,926,768	+		AMB_RS22825	0.34	+0.2
4,926,780	+		AMB_RS22825	0.34	+0.2
4,926,780	+		AMB_RS22825	0.34	-0.6
4,926,780	+		AMB_RS22825	0.34	-0.3
4,926,792	+		AMB_RS22825	0.35	+0.7
4,926,792	+		AMB_RS22825	0.35	-1.1
4,926,792	+		AMB_RS22825	0.35	+0.2
4,926,793	-		AMB_RS22825	0.35	-0.8
4,926,793	-		AMB_RS22825	0.35	+0.2
4,926,967	-		AMB_RS22825	0.39	-1.4
4,927,131	+		AMB_RS22825	0.42	-0.8
4,927,132	-		AMB_RS22825	0.42	-0.9
4,927,626	+		AMB_RS22825	0.53	-0.3
4,927,626	+		AMB_RS22825	0.53	-0.8
4,927,627	-		AMB_RS22825	0.53	-0.4
4,927,647	+		AMB_RS22825	0.53	-1.1
4,927,647	+		AMB_RS22825	0.53	-0.8
4,927,647	+		AMB_RS22825	0.53	-1.1
4,927,647	+		AMB_RS22825	0.53	-2.8
4,927,647	+		AMB_RS22825	0.53	-1.3
4,927,647	+		AMB_RS22825	0.53	-0.6
4,927,648	-		AMB_RS22825	0.53	-3.0
4,927,648	-		AMB_RS22825	0.53	-0.5
4,927,648	-		AMB_RS22825	0.53	+0.4
4,927,648	-		AMB_RS22825	0.53	+1.7
4,927,869	+		AMB_RS22825	0.58	-1.0
4,927,870	-		AMB_RS22825	0.58	-0.6
4,927,870	-		AMB_RS22825	0.58	+0.7
4,928,121	+		AMB_RS22825	0.64	-1.3
4,928,121	+		AMB_RS22825	0.64	+0.4
4,928,121	+		AMB_RS22825	0.64	-0.6
4,928,121	+		AMB_RS22825	0.64	+0.0
4,928,122	-		AMB_RS22825	0.64	-0.2
4,928,122	-		AMB_RS22825	0.64	-0.3
4,928,122	-		AMB_RS22825	0.64	-0.6
4,928,122	-		AMB_RS22825	0.64	-2.1
4,928,122	-		AMB_RS22825	0.64	-1.6
4,928,214	+		AMB_RS22825	0.66	-1.4
4,928,215	-		AMB_RS22825	0.66	-2.0
4,928,215	-		AMB_RS22825	0.66	-0.1
4,928,349	+		AMB_RS22825	0.69	+0.2
4,928,350	-		AMB_RS22825	0.69	+0.6
4,928,475	+		AMB_RS22825	0.71	-3.1
4,928,476	-		AMB_RS22825	0.71	-2.1
4,928,476	-		AMB_RS22825	0.71	+0.7
4,928,601	+		AMB_RS22825	0.74	+1.2
4,928,695	-		AMB_RS22825	0.76	-0.8
4,928,763	+		AMB_RS22825	0.78	-0.8
4,928,763	+		AMB_RS22825	0.78	+1.7
4,928,763	+		AMB_RS22825	0.78	+0.7
4,928,764	-		AMB_RS22825	0.78	-1.4
4,928,764	-		AMB_RS22825	0.78	-2.2
4,928,764	-		AMB_RS22825	0.78	-0.7
4,928,764	-		AMB_RS22825	0.78	-2.2
4,928,764	-		AMB_RS22825	0.78	-2.6
4,928,764	-		AMB_RS22825	0.78	+0.1
4,928,764	-		AMB_RS22825	0.78	+0.7
4,928,764	-		AMB_RS22825	0.78	+0.2
4,928,764	-		AMB_RS22825	0.78	-0.8
4,928,784	+		AMB_RS22825	0.78	-0.4
4,928,785	-		AMB_RS22825	0.78	-0.6
4,928,952	-		AMB_RS22825	0.82	-2.4
4,928,952	-		AMB_RS22825	0.82	-1.0
4,928,952	-		AMB_RS22825	0.82	+1.7
4,928,952	-		AMB_RS22825	0.82	-0.1
4,928,952	-		AMB_RS22825	0.82	-0.4
4,928,952	-		AMB_RS22825	0.82	-1.6
4,928,952	-		AMB_RS22825	0.82	-1.6
4,928,952	-		AMB_RS22825	0.82	-0.3
4,928,952	-		AMB_RS22825	0.82	-2.2
4,929,084	-		AMB_RS22825	0.85	+0.4
4,929,411	+				+0.7
4,929,412	-				-1.1
4,929,412	-				-1.3
4,929,491	+				+0.2
4,929,491	+				-0.6
4,929,492	-				-0.3
4,929,513	+				+1.0
4,929,514	-				-0.8
4,929,514	-				+0.3
4,929,514	-				+0.2
4,929,536	+				+0.4
4,929,597	-				-2.5
4,929,695	+				-1.9
4,929,695	+				-1.3
4,929,696	-				-0.0
4,929,696	-				+0.1
4,929,696	-				-2.1
4,929,789	+				-1.7
4,929,811	+				-1.6
4,929,811	+				-0.6
4,929,811	+				-2.2
4,929,934	+		AMB_RS22830	0.56	+1.7
4,929,934	+		AMB_RS22830	0.56	-1.2
4,929,935	-		AMB_RS22830	0.56	-1.4
4,929,935	-		AMB_RS22830	0.56	+0.5
4,929,935	-		AMB_RS22830	0.56	-0.3
4,929,953	+		AMB_RS22830	0.64	-0.8
4,929,953	+		AMB_RS22830	0.64	-1.4
4,929,954	-		AMB_RS22830	0.64	+0.3
4,929,954	-		AMB_RS22830	0.64	-0.7
4,929,986	-		AMB_RS22830	0.78	-1.3
4,930,076	+				+1.7
4,930,076	+				-0.3
4,930,076	+				-0.6
4,930,077	-				-0.5
4,930,077	-				+0.2
4,930,077	-				+0.7
4,930,077	-				+0.0
4,930,077	-				-1.1
4,930,100	-				+1.7
4,930,104	-				-3.0
4,930,104	-				-1.1
4,930,178	+		AMB_RS22835	0.12	-1.3
4,930,178	+		AMB_RS22835	0.12	-0.3
4,930,178	+		AMB_RS22835	0.12	+0.3
4,930,178	+		AMB_RS22835	0.12	-0.2
4,930,179	-		AMB_RS22835	0.12	-0.8
4,930,179	-		AMB_RS22835	0.12	+0.2
4,930,179	-		AMB_RS22835	0.12	-2.6
4,930,179	-		AMB_RS22835	0.12	-0.6
4,930,179	-		AMB_RS22835	0.12	-1.7
4,930,179	-		AMB_RS22835	0.12	+0.2
4,930,179	-		AMB_RS22835	0.12	+1.3
4,930,179	-		AMB_RS22835	0.12	-0.3
4,930,182	+		AMB_RS22835	0.13	-1.6
4,930,182	+		AMB_RS22835	0.13	-0.5
4,930,182	+		AMB_RS22835	0.13	+0.6
4,930,182	+		AMB_RS22835	0.13	+0.2
4,930,182	+		AMB_RS22835	0.13	+0.2
4,930,183	-		AMB_RS22835	0.13	+0.1
4,930,183	-		AMB_RS22835	0.13	-2.9
4,930,262	+		AMB_RS22835	0.40	-0.4
4,930,263	-		AMB_RS22835	0.40	-0.5
4,930,271	+		AMB_RS22835	0.43	-0.5
4,930,271	+		AMB_RS22835	0.43	-0.6
4,930,271	+		AMB_RS22835	0.43	-0.7
4,930,271	+		AMB_RS22835	0.43	-0.3
4,930,272	-		AMB_RS22835	0.44	-0.0
4,930,272	-		AMB_RS22835	0.44	-1.6
4,930,272	-		AMB_RS22835	0.44	-1.7
4,930,272	-		AMB_RS22835	0.44	+0.4
4,930,428	-				+1.7
4,930,560	+				+0.5
4,930,679	+		AMB_RS22840	0.15	-0.6
4,930,715	+		AMB_RS22840	0.20	-1.9
4,930,715	+		AMB_RS22840	0.20	-0.4
4,930,716	-		AMB_RS22840	0.20	+0.2
4,930,716	-		AMB_RS22840	0.20	-0.2
4,930,716	-		AMB_RS22840	0.20	-1.8