Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22390

Experiment: 30_an_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS22380 and AMB_RS22385 are separated by 9 nucleotidesAMB_RS22385 and AMB_RS22390 overlap by 1 nucleotidesAMB_RS22390 and AMB_RS22395 overlap by 1 nucleotides AMB_RS22380: AMB_RS22380 - cytochrome C4 precursor, at 4,830,935 to 4,831,543 _RS22380 AMB_RS22385: AMB_RS22385 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 4,831,553 to 4,832,080 _RS22385 AMB_RS22390: AMB_RS22390 - cobalamin biosynthesis protein CobW, at 4,832,080 to 4,833,087 _RS22390 AMB_RS22395: AMB_RS22395 - cobaltochelatase subunit CobN, at 4,833,087 to 4,836,791 _RS22395 Position (kb) 4832 4833 4834Strain fitness (log2 ratio) -1 0 1 2at 4831.121 kb on + strand, within AMB_RS22380at 4831.121 kb on + strand, within AMB_RS22380at 4831.121 kb on + strand, within AMB_RS22380at 4831.400 kb on + strand, within AMB_RS22380at 4831.400 kb on + strand, within AMB_RS22380at 4832.071 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
remove
4,831,121 + AMB_RS22380 0.31 +2.3
4,831,121 + AMB_RS22380 0.31 +0.3
4,831,121 + AMB_RS22380 0.31 -0.6
4,831,400 + AMB_RS22380 0.76 -0.3
4,831,400 + AMB_RS22380 0.76 +0.9
4,832,071 + -0.6

Or see this region's nucleotide sequence