Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21720

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21715 and AMB_RS21720 are separated by 203 nucleotidesAMB_RS21720 and AMB_RS21725 are separated by 13 nucleotides AMB_RS21715: AMB_RS21715 - hypothetical protein, at 4,701,394 to 4,702,020 _RS21715 AMB_RS21720: AMB_RS21720 - hypothetical protein, at 4,702,224 to 4,702,511 _RS21720 AMB_RS21725: AMB_RS21725 - hemerythrin, at 4,702,525 to 4,702,935 _RS21725 Position (kb) 4702 4703Strain fitness (log2 ratio) -3 -2 -1 0 1at 4701.233 kb on - strandat 4701.254 kb on + strandat 4701.566 kb on + strand, within AMB_RS21715at 4701.567 kb on + strand, within AMB_RS21715at 4701.567 kb on + strand, within AMB_RS21715at 4701.567 kb on + strand, within AMB_RS21715at 4701.567 kb on + strand, within AMB_RS21715at 4701.567 kb on + strand, within AMB_RS21715at 4701.570 kb on - strand, within AMB_RS21715at 4701.570 kb on - strand, within AMB_RS21715at 4701.570 kb on - strand, within AMB_RS21715at 4701.601 kb on + strand, within AMB_RS21715at 4701.601 kb on + strand, within AMB_RS21715at 4701.601 kb on + strand, within AMB_RS21715at 4701.601 kb on + strand, within AMB_RS21715at 4701.602 kb on - strand, within AMB_RS21715at 4701.602 kb on - strand, within AMB_RS21715at 4701.602 kb on - strand, within AMB_RS21715at 4701.602 kb on - strand, within AMB_RS21715at 4701.602 kb on - strand, within AMB_RS21715at 4701.614 kb on + strand, within AMB_RS21715at 4701.637 kb on + strand, within AMB_RS21715at 4701.637 kb on + strand, within AMB_RS21715at 4701.637 kb on + strand, within AMB_RS21715at 4701.638 kb on - strand, within AMB_RS21715at 4701.638 kb on - strand, within AMB_RS21715at 4701.683 kb on - strand, within AMB_RS21715at 4701.683 kb on - strand, within AMB_RS21715at 4701.683 kb on - strand, within AMB_RS21715at 4701.683 kb on - strand, within AMB_RS21715at 4701.721 kb on + strand, within AMB_RS21715at 4701.722 kb on - strand, within AMB_RS21715at 4701.722 kb on - strand, within AMB_RS21715at 4701.750 kb on + strand, within AMB_RS21715at 4701.750 kb on + strand, within AMB_RS21715at 4701.751 kb on - strand, within AMB_RS21715at 4701.901 kb on + strand, within AMB_RS21715at 4701.901 kb on + strand, within AMB_RS21715at 4701.902 kb on - strand, within AMB_RS21715at 4701.960 kb on + strandat 4701.960 kb on + strandat 4701.961 kb on - strandat 4702.019 kb on - strandat 4702.087 kb on - strandat 4702.101 kb on + strandat 4702.101 kb on + strandat 4702.101 kb on + strandat 4702.101 kb on + strandat 4702.102 kb on - strandat 4702.102 kb on - strandat 4702.170 kb on + strandat 4702.170 kb on + strandat 4702.170 kb on + strandat 4702.171 kb on - strandat 4702.171 kb on - strandat 4702.171 kb on - strandat 4702.171 kb on - strandat 4702.171 kb on - strandat 4702.191 kb on + strandat 4702.191 kb on + strandat 4702.191 kb on + strandat 4702.242 kb on + strandat 4702.243 kb on - strandat 4702.259 kb on + strand, within AMB_RS21720at 4702.281 kb on + strand, within AMB_RS21720at 4702.281 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.320 kb on + strand, within AMB_RS21720at 4702.321 kb on - strand, within AMB_RS21720at 4702.321 kb on - strand, within AMB_RS21720at 4702.321 kb on - strand, within AMB_RS21720at 4702.321 kb on - strand, within AMB_RS21720at 4702.321 kb on - strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.322 kb on + strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.323 kb on - strand, within AMB_RS21720at 4702.410 kb on + strand, within AMB_RS21720at 4702.410 kb on + strand, within AMB_RS21720at 4702.411 kb on - strand, within AMB_RS21720at 4702.411 kb on - strand, within AMB_RS21720at 4702.475 kb on + strand, within AMB_RS21720at 4702.475 kb on + strand, within AMB_RS21720at 4702.475 kb on + strand, within AMB_RS21720at 4702.475 kb on + strand, within AMB_RS21720at 4702.476 kb on - strand, within AMB_RS21720at 4702.476 kb on - strand, within AMB_RS21720at 4702.476 kb on - strand, within AMB_RS21720at 4702.476 kb on - strand, within AMB_RS21720at 4702.509 kb on + strandat 4702.509 kb on + strandat 4702.509 kb on + strandat 4702.509 kb on + strandat 4702.509 kb on + strandat 4702.510 kb on - strandat 4702.510 kb on - strandat 4702.510 kb on - strandat 4702.549 kb on + strandat 4702.550 kb on - strandat 4702.553 kb on + strandat 4702.562 kb on + strandat 4702.562 kb on + strandat 4702.566 kb on + strand, within AMB_RS21725at 4702.806 kb on + strand, within AMB_RS21725at 4702.869 kb on + strand, within AMB_RS21725at 4702.870 kb on - strand, within AMB_RS21725at 4702.885 kb on - strand, within AMB_RS21725at 4702.897 kb on - strandat 4703.148 kb on - strandat 4703.148 kb on - strandat 4703.148 kb on - strandat 4703.153 kb on - strandat 4703.247 kb on - strandat 4703.299 kb on - strandat 4703.354 kb on + strandat 4703.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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4,701,233 - +1.7
4,701,254 + -0.4
4,701,566 + AMB_RS21715 0.27 +1.0
4,701,567 + AMB_RS21715 0.28 -0.2
4,701,567 + AMB_RS21715 0.28 +0.9
4,701,567 + AMB_RS21715 0.28 +0.5
4,701,567 + AMB_RS21715 0.28 -0.9
4,701,567 + AMB_RS21715 0.28 -2.8
4,701,570 - AMB_RS21715 0.28 +0.1
4,701,570 - AMB_RS21715 0.28 -1.2
4,701,570 - AMB_RS21715 0.28 -2.3
4,701,601 + AMB_RS21715 0.33 -0.6
4,701,601 + AMB_RS21715 0.33 -1.1
4,701,601 + AMB_RS21715 0.33 -1.1
4,701,601 + AMB_RS21715 0.33 +1.7
4,701,602 - AMB_RS21715 0.33 -0.0
4,701,602 - AMB_RS21715 0.33 -2.0
4,701,602 - AMB_RS21715 0.33 -1.6
4,701,602 - AMB_RS21715 0.33 -1.1
4,701,602 - AMB_RS21715 0.33 -3.5
4,701,614 + AMB_RS21715 0.35 +0.7
4,701,637 + AMB_RS21715 0.39 +0.3
4,701,637 + AMB_RS21715 0.39 -0.9
4,701,637 + AMB_RS21715 0.39 -1.7
4,701,638 - AMB_RS21715 0.39 -0.9
4,701,638 - AMB_RS21715 0.39 -0.5
4,701,683 - AMB_RS21715 0.46 -1.3
4,701,683 - AMB_RS21715 0.46 -2.6
4,701,683 - AMB_RS21715 0.46 -1.8
4,701,683 - AMB_RS21715 0.46 -0.6
4,701,721 + AMB_RS21715 0.52 -0.2
4,701,722 - AMB_RS21715 0.52 +0.7
4,701,722 - AMB_RS21715 0.52 -0.3
4,701,750 + AMB_RS21715 0.57 -1.8
4,701,750 + AMB_RS21715 0.57 -1.1
4,701,751 - AMB_RS21715 0.57 +1.1
4,701,901 + AMB_RS21715 0.81 -2.5
4,701,901 + AMB_RS21715 0.81 +0.8
4,701,902 - AMB_RS21715 0.81 -0.3
4,701,960 + +0.1
4,701,960 + -2.3
4,701,961 - -1.9
4,702,019 - -0.8
4,702,087 - -0.6
4,702,101 + -1.5
4,702,101 + -0.2
4,702,101 + -3.3
4,702,101 + +0.7
4,702,102 - +0.1
4,702,102 - +0.3
4,702,170 + -0.5
4,702,170 + +0.1
4,702,170 + +0.3
4,702,171 - -1.7
4,702,171 - +0.2
4,702,171 - -0.8
4,702,171 - -1.6
4,702,171 - -1.3
4,702,191 + -1.1
4,702,191 + -0.3
4,702,191 + -0.9
4,702,242 + +0.3
4,702,243 - -0.7
4,702,259 + AMB_RS21720 0.12 -0.9
4,702,281 + AMB_RS21720 0.20 +0.2
4,702,281 + AMB_RS21720 0.20 +0.1
4,702,320 + AMB_RS21720 0.33 -0.0
4,702,320 + AMB_RS21720 0.33 -0.4
4,702,320 + AMB_RS21720 0.33 +0.1
4,702,320 + AMB_RS21720 0.33 +0.7
4,702,320 + AMB_RS21720 0.33 -0.3
4,702,320 + AMB_RS21720 0.33 +1.5
4,702,320 + AMB_RS21720 0.33 +1.7
4,702,320 + AMB_RS21720 0.33 +0.7
4,702,321 - AMB_RS21720 0.34 -1.4
4,702,321 - AMB_RS21720 0.34 -1.6
4,702,321 - AMB_RS21720 0.34 -0.3
4,702,321 - AMB_RS21720 0.34 -0.9
4,702,321 - AMB_RS21720 0.34 -0.7
4,702,322 + AMB_RS21720 0.34 +0.1
4,702,322 + AMB_RS21720 0.34 -1.3
4,702,322 + AMB_RS21720 0.34 -0.3
4,702,322 + AMB_RS21720 0.34 -2.6
4,702,322 + AMB_RS21720 0.34 +0.8
4,702,322 + AMB_RS21720 0.34 -0.0
4,702,322 + AMB_RS21720 0.34 -0.2
4,702,322 + AMB_RS21720 0.34 -3.4
4,702,322 + AMB_RS21720 0.34 +0.7
4,702,322 + AMB_RS21720 0.34 +0.7
4,702,322 + AMB_RS21720 0.34 -2.1
4,702,323 - AMB_RS21720 0.34 +0.1
4,702,323 - AMB_RS21720 0.34 -1.3
4,702,323 - AMB_RS21720 0.34 -0.6
4,702,323 - AMB_RS21720 0.34 -0.4
4,702,323 - AMB_RS21720 0.34 -2.6
4,702,323 - AMB_RS21720 0.34 -2.2
4,702,323 - AMB_RS21720 0.34 -0.2
4,702,323 - AMB_RS21720 0.34 -0.6
4,702,410 + AMB_RS21720 0.65 +0.1
4,702,410 + AMB_RS21720 0.65 -0.4
4,702,411 - AMB_RS21720 0.65 -3.4
4,702,411 - AMB_RS21720 0.65 -0.9
4,702,475 + AMB_RS21720 0.87 -0.2
4,702,475 + AMB_RS21720 0.87 -1.1
4,702,475 + AMB_RS21720 0.87 +0.4
4,702,475 + AMB_RS21720 0.87 -2.6
4,702,476 - AMB_RS21720 0.88 +1.7
4,702,476 - AMB_RS21720 0.88 -0.3
4,702,476 - AMB_RS21720 0.88 +0.0
4,702,476 - AMB_RS21720 0.88 -2.0
4,702,509 + -0.5
4,702,509 + -1.1
4,702,509 + +0.1
4,702,509 + +0.2
4,702,509 + -0.3
4,702,510 - -1.1
4,702,510 - -0.2
4,702,510 - -0.1
4,702,549 + -2.9
4,702,550 - -0.3
4,702,553 + -2.1
4,702,562 + -0.2
4,702,562 + -0.9
4,702,566 + AMB_RS21725 0.10 +0.1
4,702,806 + AMB_RS21725 0.68 -0.3
4,702,869 + AMB_RS21725 0.84 -0.4
4,702,870 - AMB_RS21725 0.84 +1.7
4,702,885 - AMB_RS21725 0.88 -1.2
4,702,897 - -0.6
4,703,148 - -2.9
4,703,148 - -0.3
4,703,148 - +0.1
4,703,153 - -0.3
4,703,247 - -0.3
4,703,299 - -1.1
4,703,354 + -0.9
4,703,354 + -0.7

Or see this region's nucleotide sequence