Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21535 and AMB_RS21540 are separated by 7 nucleotides AMB_RS21540 and AMB_RS21545 are separated by 208 nucleotides AMB_RS21545 and AMB_RS21550 are separated by 138 nucleotides AMB_RS21550 and AMB_RS21555 overlap by 4 nucleotides
AMB_RS21535: AMB_RS21535 - cyclic nucleotide-binding domain-containing protein, at 4,669,911 to 4,670,249
_RS21535
AMB_RS21540: AMB_RS21540 - ubiquinone-binding protein, at 4,670,257 to 4,670,697
_RS21540
AMB_RS21545: AMB_RS21545 - 30S ribosomal protein S1, at 4,670,906 to 4,672,603
_RS21545
AMB_RS21550: AMB_RS21550 - cytidylate kinase, at 4,672,742 to 4,673,377
_RS21550
AMB_RS21555: AMB_RS21555 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 4,673,374 to 4,674,708
_RS21555
Position (kb) 4670
4671
4672
4673 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4669.916 kb on + strand at 4669.917 kb on - strand at 4669.923 kb on - strand at 4669.923 kb on - strand at 4669.947 kb on + strand, within AMB_RS21535 at 4669.947 kb on + strand, within AMB_RS21535 at 4669.948 kb on - strand, within AMB_RS21535 at 4670.317 kb on + strand, within AMB_RS21540 at 4670.317 kb on + strand, within AMB_RS21540 at 4670.318 kb on - strand, within AMB_RS21540 at 4670.318 kb on - strand, within AMB_RS21540 at 4670.318 kb on - strand, within AMB_RS21540 at 4670.578 kb on + strand, within AMB_RS21540 at 4670.578 kb on + strand, within AMB_RS21540 at 4670.579 kb on - strand, within AMB_RS21540 at 4670.579 kb on - strand, within AMB_RS21540 at 4670.579 kb on - strand, within AMB_RS21540 at 4670.686 kb on + strand at 4670.830 kb on + strand at 4670.830 kb on + strand at 4670.830 kb on + strand at 4670.831 kb on - strand at 4670.831 kb on - strand at 4672.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 4,669,916 + -1.2 4,669,917 - -0.7 4,669,923 - -0.6 4,669,923 - -2.0 4,669,947 + AMB_RS21535 0.11 -3.6 4,669,947 + AMB_RS21535 0.11 -1.5 4,669,948 - AMB_RS21535 0.11 -2.0 4,670,317 + AMB_RS21540 0.14 -0.3 4,670,317 + AMB_RS21540 0.14 -2.9 4,670,318 - AMB_RS21540 0.14 -0.3 4,670,318 - AMB_RS21540 0.14 +0.1 4,670,318 - AMB_RS21540 0.14 +1.1 4,670,578 + AMB_RS21540 0.73 -2.6 4,670,578 + AMB_RS21540 0.73 -0.6 4,670,579 - AMB_RS21540 0.73 -1.1 4,670,579 - AMB_RS21540 0.73 -0.5 4,670,579 - AMB_RS21540 0.73 -0.9 4,670,686 + -0.3 4,670,830 + -0.5 4,670,830 + -0.5 4,670,830 + -0.9 4,670,831 - +0.0 4,670,831 - +0.1 4,672,744 - -0.3
Or see this region's nucleotide sequence