Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20585

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20580 and AMB_RS20585 are separated by 27 nucleotidesAMB_RS20585 and AMB_RS20590 are separated by 10 nucleotides AMB_RS20580: AMB_RS20580 - translation initiation factor IF-2, at 4,471,218 to 4,473,836 _RS20580 AMB_RS20585: AMB_RS20585 - DNA-binding protein, at 4,473,864 to 4,474,460 _RS20585 AMB_RS20590: AMB_RS20590 - transcription termination/antitermination protein NusA, at 4,474,471 to 4,475,982 _RS20590 Position (kb) 4473 4474 4475Strain fitness (log2 ratio) -2 -1 0 1at 4474.270 kb on - strand, within AMB_RS20585at 4474.270 kb on - strand, within AMB_RS20585at 4474.340 kb on + strand, within AMB_RS20585at 4474.341 kb on - strand, within AMB_RS20585at 4474.473 kb on - strandat 4474.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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4,474,270 - AMB_RS20585 0.68 +0.5
4,474,270 - AMB_RS20585 0.68 -1.2
4,474,340 + AMB_RS20585 0.80 -2.5
4,474,341 - AMB_RS20585 0.80 -0.0
4,474,473 - -0.4
4,474,473 - +0.2

Or see this region's nucleotide sequence