Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20070 and AMB_RS20075 are separated by 142 nucleotides AMB_RS20075 and AMB_RS20080 overlap by 71 nucleotides AMB_RS20080 and AMB_RS20085 are separated by 40 nucleotides
AMB_RS20070: AMB_RS20070 - MFS transporter, at 4,376,492 to 4,377,622
_RS20070
AMB_RS20075: AMB_RS20075 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,377,765 to 4,378,079
_RS20075
AMB_RS20080: AMB_RS20080 - transcriptional regulator, at 4,378,009 to 4,378,353
_RS20080
AMB_RS20085: AMB_RS20085 - polyphosphate:AMP phosphotransferase, at 4,378,394 to 4,379,932
_RS20085
Position (kb) 4377
4378
4379 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.774 kb on + strand, within AMB_RS20070 at 4376.775 kb on + strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.775 kb on - strand, within AMB_RS20070 at 4376.776 kb on + strand, within AMB_RS20070 at 4376.776 kb on + strand, within AMB_RS20070 at 4376.777 kb on - strand, within AMB_RS20070 at 4376.777 kb on - strand, within AMB_RS20070 at 4376.777 kb on - strand, within AMB_RS20070 at 4376.777 kb on - strand, within AMB_RS20070 at 4376.777 kb on - strand, within AMB_RS20070 at 4376.843 kb on + strand, within AMB_RS20070 at 4376.843 kb on + strand, within AMB_RS20070 at 4376.844 kb on - strand, within AMB_RS20070 at 4377.068 kb on + strand, within AMB_RS20070 at 4377.069 kb on - strand, within AMB_RS20070 at 4377.069 kb on - strand, within AMB_RS20070 at 4377.069 kb on - strand, within AMB_RS20070 at 4377.069 kb on - strand, within AMB_RS20070 at 4377.339 kb on - strand, within AMB_RS20070 at 4377.368 kb on + strand, within AMB_RS20070 at 4377.368 kb on + strand, within AMB_RS20070 at 4377.369 kb on - strand, within AMB_RS20070 at 4377.369 kb on - strand, within AMB_RS20070 at 4377.369 kb on - strand, within AMB_RS20070 at 4377.402 kb on + strand, within AMB_RS20070 at 4377.403 kb on - strand, within AMB_RS20070 at 4377.620 kb on + strand at 4377.620 kb on + strand at 4377.620 kb on + strand at 4377.620 kb on + strand at 4377.620 kb on + strand at 4377.621 kb on - strand at 4377.693 kb on - strand at 4377.693 kb on - strand at 4377.693 kb on - strand at 4377.697 kb on + strand at 4377.697 kb on + strand at 4377.698 kb on - strand at 4378.321 kb on + strand at 4378.321 kb on + strand at 4378.321 kb on + strand at 4378.322 kb on - strand at 4378.322 kb on - strand at 4378.322 kb on - strand at 4378.347 kb on + strand at 4378.348 kb on - strand at 4378.353 kb on + strand at 4378.353 kb on + strand at 4378.353 kb on + strand at 4378.353 kb on + strand at 4378.354 kb on - strand at 4378.354 kb on - strand at 4378.354 kb on - strand at 4378.354 kb on - strand at 4378.361 kb on + strand at 4378.361 kb on + strand at 4378.613 kb on + strand, within AMB_RS20085 at 4378.614 kb on - strand, within AMB_RS20085 at 4378.653 kb on - strand, within AMB_RS20085 at 4378.661 kb on + strand, within AMB_RS20085 at 4378.662 kb on - strand, within AMB_RS20085 at 4378.949 kb on + strand, within AMB_RS20085 at 4378.949 kb on + strand, within AMB_RS20085 at 4378.949 kb on + strand, within AMB_RS20085 at 4378.949 kb on + strand, within AMB_RS20085 at 4378.949 kb on + strand, within AMB_RS20085 at 4378.949 kb on + strand, within AMB_RS20085 at 4378.950 kb on - strand, within AMB_RS20085 at 4378.950 kb on - strand, within AMB_RS20085 at 4378.950 kb on - strand, within AMB_RS20085 at 4378.950 kb on - strand, within AMB_RS20085 at 4378.950 kb on - strand, within AMB_RS20085 at 4378.950 kb on - strand, within AMB_RS20085
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 4,376,774 + AMB_RS20070 0.25 +0.0 4,376,774 + AMB_RS20070 0.25 +0.7 4,376,774 + AMB_RS20070 0.25 -1.0 4,376,774 + AMB_RS20070 0.25 -0.7 4,376,774 + AMB_RS20070 0.25 -0.4 4,376,774 + AMB_RS20070 0.25 +1.3 4,376,774 + AMB_RS20070 0.25 +1.2 4,376,774 + AMB_RS20070 0.25 +0.3 4,376,774 + AMB_RS20070 0.25 -2.9 4,376,774 + AMB_RS20070 0.25 -1.4 4,376,774 + AMB_RS20070 0.25 +0.3 4,376,774 + AMB_RS20070 0.25 -0.7 4,376,775 + AMB_RS20070 0.25 +1.2 4,376,775 - AMB_RS20070 0.25 -1.9 4,376,775 - AMB_RS20070 0.25 -1.9 4,376,775 - AMB_RS20070 0.25 +0.5 4,376,775 - AMB_RS20070 0.25 -0.4 4,376,775 - AMB_RS20070 0.25 -1.4 4,376,775 - AMB_RS20070 0.25 +0.6 4,376,775 - AMB_RS20070 0.25 -2.8 4,376,775 - AMB_RS20070 0.25 -0.2 4,376,776 + AMB_RS20070 0.25 -2.5 4,376,776 + AMB_RS20070 0.25 -4.4 4,376,777 - AMB_RS20070 0.25 +0.7 4,376,777 - AMB_RS20070 0.25 -0.9 4,376,777 - AMB_RS20070 0.25 -1.0 4,376,777 - AMB_RS20070 0.25 +0.6 4,376,777 - AMB_RS20070 0.25 -1.4 4,376,843 + AMB_RS20070 0.31 -1.7 4,376,843 + AMB_RS20070 0.31 +0.6 4,376,844 - AMB_RS20070 0.31 -4.0 4,377,068 + AMB_RS20070 0.51 +0.5 4,377,069 - AMB_RS20070 0.51 -1.6 4,377,069 - AMB_RS20070 0.51 -4.4 4,377,069 - AMB_RS20070 0.51 -0.7 4,377,069 - AMB_RS20070 0.51 -0.3 4,377,339 - AMB_RS20070 0.75 +0.4 4,377,368 + AMB_RS20070 0.77 -0.6 4,377,368 + AMB_RS20070 0.77 -1.4 4,377,369 - AMB_RS20070 0.78 -0.6 4,377,369 - AMB_RS20070 0.78 +0.1 4,377,369 - AMB_RS20070 0.78 -1.0 4,377,402 + AMB_RS20070 0.80 -0.2 4,377,403 - AMB_RS20070 0.81 -1.4 4,377,620 + +1.2 4,377,620 + -2.4 4,377,620 + +0.4 4,377,620 + -1.6 4,377,620 + +0.3 4,377,621 - -1.0 4,377,693 - +0.6 4,377,693 - -0.9 4,377,693 - -1.2 4,377,697 + -0.6 4,377,697 + -2.1 4,377,698 - -1.9 4,378,321 + -0.6 4,378,321 + +0.6 4,378,321 + -0.7 4,378,322 - +0.0 4,378,322 - +0.1 4,378,322 - -0.4 4,378,347 + -1.0 4,378,348 - -0.4 4,378,353 + +1.3 4,378,353 + -0.1 4,378,353 + -3.0 4,378,353 + +0.3 4,378,354 - -0.0 4,378,354 - -1.9 4,378,354 - +0.4 4,378,354 - -0.6 4,378,361 + +0.3 4,378,361 + -0.9 4,378,613 + AMB_RS20085 0.14 -1.2 4,378,614 - AMB_RS20085 0.14 -0.3 4,378,653 - AMB_RS20085 0.17 -1.4 4,378,661 + AMB_RS20085 0.17 -2.9 4,378,662 - AMB_RS20085 0.17 -1.7 4,378,949 + AMB_RS20085 0.36 +0.0 4,378,949 + AMB_RS20085 0.36 -3.2 4,378,949 + AMB_RS20085 0.36 -2.7 4,378,949 + AMB_RS20085 0.36 -0.9 4,378,949 + AMB_RS20085 0.36 -0.6 4,378,949 + AMB_RS20085 0.36 -0.4 4,378,950 - AMB_RS20085 0.36 +1.6 4,378,950 - AMB_RS20085 0.36 +0.6 4,378,950 - AMB_RS20085 0.36 +0.6 4,378,950 - AMB_RS20085 0.36 -0.2 4,378,950 - AMB_RS20085 0.36 -2.0 4,378,950 - AMB_RS20085 0.36 +0.0
Or see this region's nucleotide sequence