Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20025

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20020 and AMB_RS20025 are separated by 298 nucleotidesAMB_RS20025 and AMB_RS20030 are separated by 31 nucleotides AMB_RS20020: AMB_RS20020 - cell division protein ZapE, at 4,364,371 to 4,365,534 _RS20020 AMB_RS20025: AMB_RS20025 - malate dehydrogenase, at 4,365,833 to 4,366,792 _RS20025 AMB_RS20030: AMB_RS20030 - succinyl-CoA ligase subunit beta, at 4,366,824 to 4,368,020 _RS20030 Position (kb) 4365 4366 4367Strain fitness (log2 ratio) -2 -1 0 1at 4365.079 kb on + strand, within AMB_RS20020at 4365.272 kb on - strand, within AMB_RS20020at 4365.436 kb on + strandat 4365.508 kb on + strandat 4365.509 kb on - strandat 4365.509 kb on - strandat 4365.747 kb on + strandat 4365.747 kb on + strandat 4365.747 kb on + strandat 4365.747 kb on + strandat 4365.747 kb on + strandat 4365.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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4,365,079 + AMB_RS20020 0.61 -1.4
4,365,272 - AMB_RS20020 0.77 -1.7
4,365,436 + -2.0
4,365,508 + -0.1
4,365,509 - -2.0
4,365,509 - +0.0
4,365,747 + -0.4
4,365,747 + -1.2
4,365,747 + -2.5
4,365,747 + -1.6
4,365,747 + -1.2
4,365,747 + -1.3

Or see this region's nucleotide sequence