Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16035

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16025 and AMB_RS16030 are separated by 218 nucleotidesAMB_RS16030 and AMB_RS16035 overlap by 4 nucleotidesAMB_RS16035 and AMB_RS16040 are separated by 44 nucleotides AMB_RS16025: AMB_RS16025 - MFS transporter, at 3,439,261 to 3,440,574 _RS16025 AMB_RS16030: AMB_RS16030 - L(+)-tartrate dehydratase subunit beta, at 3,440,793 to 3,441,401 _RS16030 AMB_RS16035: AMB_RS16035 - L(+)-tartrate dehydratase subunit alpha, at 3,441,398 to 3,442,396 _RS16035 AMB_RS16040: AMB_RS16040 - LysR family transcriptional regulator, at 3,442,441 to 3,443,356 _RS16040 Position (kb) 3441 3442 3443Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3440.601 kb on - strandat 3440.603 kb on - strandat 3440.642 kb on - strandat 3440.664 kb on - strandat 3440.664 kb on - strandat 3440.673 kb on - strandat 3440.696 kb on - strandat 3440.742 kb on + strandat 3440.742 kb on + strandat 3440.743 kb on - strandat 3440.743 kb on - strandat 3440.743 kb on - strandat 3441.433 kb on - strandat 3441.861 kb on + strand, within AMB_RS16035at 3441.862 kb on - strand, within AMB_RS16035

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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3,440,601 - -5.3
3,440,603 - +1.5
3,440,642 - -1.1
3,440,664 - -1.2
3,440,664 - -1.9
3,440,673 - -3.0
3,440,696 - -1.8
3,440,742 + +0.2
3,440,742 + -2.4
3,440,743 - -0.5
3,440,743 - -0.0
3,440,743 - +1.5
3,441,433 - -0.2
3,441,861 + AMB_RS16035 0.46 -1.7
3,441,862 - AMB_RS16035 0.46 +0.1

Or see this region's nucleotide sequence