Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS15420 and AMB_RS15425 overlap by 4 nucleotides AMB_RS15425 and AMB_RS15430 are separated by 39 nucleotides
AMB_RS15420: AMB_RS15420 - 4-alpha-glucanotransferase, at 3,309,274 to 3,311,466
_RS15420
AMB_RS15425: AMB_RS15425 - glycogen debranching enzyme GlgX, at 3,311,463 to 3,313,625
_RS15425
AMB_RS15430: AMB_RS15430 - 1,4-alpha-glucan branching protein GlgB, at 3,313,665 to 3,315,857
_RS15430
Position (kb) 3311
3312
3313
3314 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3310.644 kb on - strand, within AMB_RS15420 at 3310.713 kb on + strand, within AMB_RS15420 at 3310.715 kb on + strand, within AMB_RS15420 at 3310.715 kb on + strand, within AMB_RS15420 at 3310.715 kb on + strand, within AMB_RS15420 at 3310.716 kb on - strand, within AMB_RS15420 at 3310.716 kb on - strand, within AMB_RS15420 at 3310.716 kb on - strand, within AMB_RS15420 at 3310.863 kb on - strand, within AMB_RS15420 at 3310.863 kb on - strand, within AMB_RS15420 at 3310.863 kb on - strand, within AMB_RS15420 at 3310.901 kb on + strand, within AMB_RS15420 at 3310.901 kb on + strand, within AMB_RS15420 at 3310.901 kb on + strand, within AMB_RS15420 at 3310.901 kb on + strand, within AMB_RS15420 at 3310.901 kb on + strand, within AMB_RS15420 at 3310.901 kb on + strand, within AMB_RS15420 at 3310.902 kb on - strand, within AMB_RS15420 at 3310.902 kb on - strand, within AMB_RS15420 at 3310.902 kb on - strand, within AMB_RS15420 at 3310.902 kb on - strand, within AMB_RS15420 at 3311.034 kb on - strand, within AMB_RS15420 at 3311.100 kb on - strand, within AMB_RS15420 at 3311.100 kb on - strand, within AMB_RS15420 at 3311.554 kb on + strand at 3311.659 kb on + strand at 3311.659 kb on + strand at 3311.659 kb on + strand at 3311.659 kb on + strand at 3311.659 kb on + strand at 3311.660 kb on - strand at 3312.001 kb on + strand, within AMB_RS15425 at 3312.002 kb on - strand, within AMB_RS15425 at 3312.169 kb on + strand, within AMB_RS15425 at 3312.170 kb on - strand, within AMB_RS15425 at 3312.539 kb on + strand, within AMB_RS15425 at 3312.539 kb on + strand, within AMB_RS15425 at 3312.694 kb on + strand, within AMB_RS15425 at 3312.736 kb on + strand, within AMB_RS15425 at 3312.736 kb on + strand, within AMB_RS15425 at 3312.736 kb on + strand, within AMB_RS15425 at 3312.761 kb on - strand, within AMB_RS15425 at 3312.806 kb on - strand, within AMB_RS15425 at 3312.892 kb on + strand, within AMB_RS15425 at 3312.937 kb on + strand, within AMB_RS15425 at 3313.324 kb on + strand, within AMB_RS15425 at 3313.325 kb on - strand, within AMB_RS15425 at 3313.432 kb on + strand at 3313.456 kb on + strand at 3313.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 3,310,644 - AMB_RS15420 0.62 +1.5 3,310,713 + AMB_RS15420 0.66 -1.5 3,310,715 + AMB_RS15420 0.66 +1.2 3,310,715 + AMB_RS15420 0.66 -0.9 3,310,715 + AMB_RS15420 0.66 -1.1 3,310,716 - AMB_RS15420 0.66 -0.2 3,310,716 - AMB_RS15420 0.66 -0.9 3,310,716 - AMB_RS15420 0.66 -0.6 3,310,863 - AMB_RS15420 0.72 -0.8 3,310,863 - AMB_RS15420 0.72 +0.8 3,310,863 - AMB_RS15420 0.72 +0.5 3,310,901 + AMB_RS15420 0.74 -0.5 3,310,901 + AMB_RS15420 0.74 +0.4 3,310,901 + AMB_RS15420 0.74 +0.1 3,310,901 + AMB_RS15420 0.74 +0.3 3,310,901 + AMB_RS15420 0.74 -1.5 3,310,901 + AMB_RS15420 0.74 +0.2 3,310,902 - AMB_RS15420 0.74 -0.5 3,310,902 - AMB_RS15420 0.74 +0.9 3,310,902 - AMB_RS15420 0.74 -2.2 3,310,902 - AMB_RS15420 0.74 +0.5 3,311,034 - AMB_RS15420 0.80 +0.1 3,311,100 - AMB_RS15420 0.83 +0.3 3,311,100 - AMB_RS15420 0.83 +0.7 3,311,554 + -0.5 3,311,659 + -0.0 3,311,659 + -0.1 3,311,659 + -1.4 3,311,659 + +1.0 3,311,659 + +0.9 3,311,660 - -3.5 3,312,001 + AMB_RS15425 0.25 -0.1 3,312,002 - AMB_RS15425 0.25 +1.0 3,312,169 + AMB_RS15425 0.33 -0.9 3,312,170 - AMB_RS15425 0.33 -1.1 3,312,539 + AMB_RS15425 0.50 -1.1 3,312,539 + AMB_RS15425 0.50 -0.1 3,312,694 + AMB_RS15425 0.57 -2.7 3,312,736 + AMB_RS15425 0.59 -1.4 3,312,736 + AMB_RS15425 0.59 +0.7 3,312,736 + AMB_RS15425 0.59 -1.7 3,312,761 - AMB_RS15425 0.60 -2.7 3,312,806 - AMB_RS15425 0.62 -0.1 3,312,892 + AMB_RS15425 0.66 -3.0 3,312,937 + AMB_RS15425 0.68 +0.0 3,313,324 + AMB_RS15425 0.86 -0.9 3,313,325 - AMB_RS15425 0.86 -0.5 3,313,432 + -0.5 3,313,456 + -2.4 3,313,659 - +0.2
Or see this region's nucleotide sequence