Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12720

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12710 and AMB_RS12715 overlap by 4 nucleotidesAMB_RS12715 and AMB_RS12720 overlap by 4 nucleotidesAMB_RS12720 and AMB_RS12725 overlap by 14 nucleotidesAMB_RS12725 and AMB_RS12730 are separated by 19 nucleotides AMB_RS12710: AMB_RS12710 - segregation/condensation protein A, at 2,706,793 to 2,707,608 _RS12710 AMB_RS12715: AMB_RS12715 - site-2 protease family protein, at 2,707,605 to 2,708,291 _RS12715 AMB_RS12720: AMB_RS12720 - beta-N-acetylhexosaminidase, at 2,708,288 to 2,709,319 _RS12720 AMB_RS12725: AMB_RS12725 - SPOR domain-containing protein, at 2,709,306 to 2,710,262 _RS12725 AMB_RS12730: AMB_RS12730 - arginine--tRNA ligase, at 2,710,282 to 2,712,012 _RS12730 Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -1 0 1at 2707.349 kb on + strand, within AMB_RS12710at 2707.376 kb on + strand, within AMB_RS12710at 2707.377 kb on - strand, within AMB_RS12710

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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2,707,349 + AMB_RS12710 0.68 -1.2
2,707,376 + AMB_RS12710 0.71 -0.7
2,707,377 - AMB_RS12710 0.72 -1.5

Or see this region's nucleotide sequence