Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09100

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09090 and AMB_RS09095 overlap by 4 nucleotidesAMB_RS09095 and AMB_RS09100 are separated by 5 nucleotidesAMB_RS09100 and AMB_RS24350 are separated by 10 nucleotidesAMB_RS24350 and AMB_RS09110 overlap by 21 nucleotides AMB_RS09090: AMB_RS09090 - hypothetical protein, at 1,935,788 to 1,936,960 _RS09090 AMB_RS09095: AMB_RS09095 - hypothetical protein, at 1,936,957 to 1,937,424 _RS09095 AMB_RS09100: AMB_RS09100 - hypothetical protein, at 1,937,430 to 1,938,800 _RS09100 AMB_RS24350: AMB_RS24350 - hypothetical protein, at 1,938,811 to 1,939,101 _RS24350 AMB_RS09110: AMB_RS09110 - diguanylate cyclase response regulator, at 1,939,081 to 1,940,949 _RS09110 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1936.674 kb on + strand, within AMB_RS09090at 1936.747 kb on - strand, within AMB_RS09090at 1936.747 kb on - strand, within AMB_RS09090at 1936.869 kb on + strandat 1936.985 kb on + strandat 1937.024 kb on + strand, within AMB_RS09095at 1937.102 kb on + strand, within AMB_RS09095at 1937.103 kb on - strand, within AMB_RS09095at 1937.171 kb on - strand, within AMB_RS09095at 1937.213 kb on + strand, within AMB_RS09095at 1937.213 kb on + strand, within AMB_RS09095at 1937.214 kb on - strand, within AMB_RS09095at 1937.944 kb on + strand, within AMB_RS09100at 1937.945 kb on - strand, within AMB_RS09100at 1938.173 kb on + strand, within AMB_RS09100at 1938.173 kb on + strand, within AMB_RS09100at 1938.173 kb on + strand, within AMB_RS09100at 1938.174 kb on - strand, within AMB_RS09100at 1938.174 kb on - strand, within AMB_RS09100at 1938.397 kb on + strand, within AMB_RS09100at 1938.398 kb on - strand, within AMB_RS09100at 1938.412 kb on + strand, within AMB_RS09100at 1938.413 kb on - strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.415 kb on + strand, within AMB_RS09100at 1938.416 kb on - strand, within AMB_RS09100at 1938.416 kb on - strand, within AMB_RS09100at 1938.416 kb on - strand, within AMB_RS09100at 1938.418 kb on + strand, within AMB_RS09100at 1938.419 kb on - strand, within AMB_RS09100at 1938.419 kb on - strand, within AMB_RS09100at 1938.419 kb on - strand, within AMB_RS09100at 1938.436 kb on + strand, within AMB_RS09100at 1938.514 kb on + strand, within AMB_RS09100at 1938.514 kb on + strand, within AMB_RS09100at 1938.515 kb on - strand, within AMB_RS09100at 1938.515 kb on - strand, within AMB_RS09100at 1938.515 kb on - strand, within AMB_RS09100at 1938.688 kb on + strandat 1938.689 kb on - strandat 1938.689 kb on - strandat 1938.812 kb on + strandat 1938.819 kb on - strandat 1938.855 kb on - strand, within AMB_RS24350at 1938.917 kb on + strand, within AMB_RS24350at 1938.917 kb on + strand, within AMB_RS24350at 1938.917 kb on + strand, within AMB_RS24350at 1938.918 kb on - strand, within AMB_RS24350at 1939.341 kb on + strand, within AMB_RS09110at 1939.341 kb on + strand, within AMB_RS09110at 1939.341 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.343 kb on + strand, within AMB_RS09110at 1939.344 kb on - strand, within AMB_RS09110at 1939.452 kb on + strand, within AMB_RS09110at 1939.457 kb on + strand, within AMB_RS09110at 1939.457 kb on + strand, within AMB_RS09110at 1939.480 kb on - strand, within AMB_RS09110at 1939.480 kb on - strand, within AMB_RS09110at 1939.506 kb on + strand, within AMB_RS09110at 1939.506 kb on + strand, within AMB_RS09110at 1939.551 kb on + strand, within AMB_RS09110at 1939.551 kb on + strand, within AMB_RS09110at 1939.559 kb on + strand, within AMB_RS09110at 1939.559 kb on + strand, within AMB_RS09110at 1939.560 kb on - strand, within AMB_RS09110at 1939.560 kb on - strand, within AMB_RS09110at 1939.763 kb on - strand, within AMB_RS09110

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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1,936,674 + AMB_RS09090 0.76 -0.2
1,936,747 - AMB_RS09090 0.82 -0.9
1,936,747 - AMB_RS09090 0.82 -3.5
1,936,869 + -1.0
1,936,985 + -2.2
1,937,024 + AMB_RS09095 0.14 +0.4
1,937,102 + AMB_RS09095 0.31 -5.3
1,937,103 - AMB_RS09095 0.31 -1.4
1,937,171 - AMB_RS09095 0.46 -2.2
1,937,213 + AMB_RS09095 0.55 -0.0
1,937,213 + AMB_RS09095 0.55 -1.2
1,937,214 - AMB_RS09095 0.55 -1.8
1,937,944 + AMB_RS09100 0.37 -1.2
1,937,945 - AMB_RS09100 0.38 +0.3
1,938,173 + AMB_RS09100 0.54 -2.4
1,938,173 + AMB_RS09100 0.54 -1.1
1,938,173 + AMB_RS09100 0.54 +1.0
1,938,174 - AMB_RS09100 0.54 +0.0
1,938,174 - AMB_RS09100 0.54 +0.1
1,938,397 + AMB_RS09100 0.71 -3.5
1,938,398 - AMB_RS09100 0.71 +0.4
1,938,412 + AMB_RS09100 0.72 -0.9
1,938,413 - AMB_RS09100 0.72 -0.2
1,938,415 + AMB_RS09100 0.72 +0.0
1,938,415 + AMB_RS09100 0.72 -0.4
1,938,415 + AMB_RS09100 0.72 -2.1
1,938,415 + AMB_RS09100 0.72 -0.6
1,938,415 + AMB_RS09100 0.72 +0.2
1,938,415 + AMB_RS09100 0.72 -1.4
1,938,416 - AMB_RS09100 0.72 -0.1
1,938,416 - AMB_RS09100 0.72 +0.8
1,938,416 - AMB_RS09100 0.72 -1.5
1,938,418 + AMB_RS09100 0.72 -0.6
1,938,419 - AMB_RS09100 0.72 -1.2
1,938,419 - AMB_RS09100 0.72 -2.2
1,938,419 - AMB_RS09100 0.72 +0.2
1,938,436 + AMB_RS09100 0.73 -0.4
1,938,514 + AMB_RS09100 0.79 -1.6
1,938,514 + AMB_RS09100 0.79 +0.2
1,938,515 - AMB_RS09100 0.79 -0.2
1,938,515 - AMB_RS09100 0.79 +0.0
1,938,515 - AMB_RS09100 0.79 +1.5
1,938,688 + -0.6
1,938,689 - -0.4
1,938,689 - -0.5
1,938,812 + -0.6
1,938,819 - -0.1
1,938,855 - AMB_RS24350 0.15 -1.9
1,938,917 + AMB_RS24350 0.36 -0.2
1,938,917 + AMB_RS24350 0.36 -1.9
1,938,917 + AMB_RS24350 0.36 -1.2
1,938,918 - AMB_RS24350 0.37 -2.2
1,939,341 + AMB_RS09110 0.14 -1.3
1,939,341 + AMB_RS09110 0.14 -0.4
1,939,341 + AMB_RS09110 0.14 -1.2
1,939,343 + AMB_RS09110 0.14 -1.4
1,939,343 + AMB_RS09110 0.14 -1.6
1,939,343 + AMB_RS09110 0.14 +0.7
1,939,343 + AMB_RS09110 0.14 -2.8
1,939,343 + AMB_RS09110 0.14 +0.9
1,939,344 - AMB_RS09110 0.14 +1.0
1,939,452 + AMB_RS09110 0.20 -0.4
1,939,457 + AMB_RS09110 0.20 -0.2
1,939,457 + AMB_RS09110 0.20 -1.6
1,939,480 - AMB_RS09110 0.21 +1.5
1,939,480 - AMB_RS09110 0.21 -3.0
1,939,506 + AMB_RS09110 0.23 -0.2
1,939,506 + AMB_RS09110 0.23 -1.9
1,939,551 + AMB_RS09110 0.25 -1.1
1,939,551 + AMB_RS09110 0.25 +0.4
1,939,559 + AMB_RS09110 0.26 +0.1
1,939,559 + AMB_RS09110 0.26 -0.1
1,939,560 - AMB_RS09110 0.26 -0.6
1,939,560 - AMB_RS09110 0.26 -0.5
1,939,763 - AMB_RS09110 0.36 -0.4

Or see this region's nucleotide sequence