Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS08395 and AMB_RS08400 overlap by 4 nucleotides AMB_RS08400 and AMB_RS08405 are separated by 111 nucleotides AMB_RS08405 and AMB_RS08410 are separated by 74 nucleotides AMB_RS08410 and AMB_RS08415 are separated by 93 nucleotides
AMB_RS08395: AMB_RS08395 - hypothetical protein, at 1,798,119 to 1,798,574
_RS08395
AMB_RS08400: AMB_RS08400 - ATP-sensitive inward rectifier potassium channel 10, at 1,798,571 to 1,799,446
_RS08400
AMB_RS08405: AMB_RS08405 - bile acid:sodium symporter, at 1,799,558 to 1,800,535
_RS08405
AMB_RS08410: AMB_RS08410 - transcriptional repressor, at 1,800,610 to 1,801,026
_RS08410
AMB_RS08415: AMB_RS08415 - bacterioferritin, at 1,801,120 to 1,801,611
_RS08415
Position (kb) 1799
1800
1801 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1798.680 kb on + strand, within AMB_RS08400 at 1798.680 kb on + strand, within AMB_RS08400 at 1798.680 kb on + strand, within AMB_RS08400 at 1798.681 kb on - strand, within AMB_RS08400 at 1798.681 kb on - strand, within AMB_RS08400 at 1799.065 kb on - strand, within AMB_RS08400 at 1799.164 kb on - strand, within AMB_RS08400 at 1799.256 kb on + strand, within AMB_RS08400 at 1799.256 kb on + strand, within AMB_RS08400 at 1799.257 kb on - strand, within AMB_RS08400 at 1799.257 kb on - strand, within AMB_RS08400 at 1799.289 kb on + strand, within AMB_RS08400 at 1799.289 kb on + strand, within AMB_RS08400 at 1799.290 kb on - strand, within AMB_RS08400 at 1799.290 kb on - strand, within AMB_RS08400 at 1799.690 kb on + strand, within AMB_RS08405 at 1799.718 kb on - strand, within AMB_RS08405 at 1800.023 kb on + strand, within AMB_RS08405 at 1800.024 kb on - strand, within AMB_RS08405 at 1800.024 kb on - strand, within AMB_RS08405 at 1800.024 kb on - strand, within AMB_RS08405 at 1800.024 kb on - strand, within AMB_RS08405 at 1800.024 kb on - strand, within AMB_RS08405 at 1800.473 kb on + strand at 1800.473 kb on + strand at 1800.473 kb on + strand at 1800.474 kb on - strand at 1800.609 kb on + strand at 1800.609 kb on + strand at 1800.610 kb on - strand at 1800.610 kb on - strand at 1800.787 kb on + strand, within AMB_RS08410 at 1800.787 kb on + strand, within AMB_RS08410 at 1800.788 kb on - strand, within AMB_RS08410 at 1800.788 kb on - strand, within AMB_RS08410 at 1800.788 kb on - strand, within AMB_RS08410 at 1800.788 kb on - strand, within AMB_RS08410 at 1800.788 kb on - strand, within AMB_RS08410 at 1800.788 kb on - strand, within AMB_RS08410 at 1800.970 kb on + strand, within AMB_RS08410 at 1800.970 kb on + strand, within AMB_RS08410 at 1800.971 kb on - strand, within AMB_RS08410 at 1800.971 kb on - strand, within AMB_RS08410 at 1800.971 kb on - strand, within AMB_RS08410 at 1800.971 kb on - strand, within AMB_RS08410 at 1800.971 kb on - strand, within AMB_RS08410 at 1801.048 kb on - strand at 1801.132 kb on - strand at 1801.193 kb on - strand, within AMB_RS08415 at 1801.193 kb on - strand, within AMB_RS08415 at 1801.240 kb on + strand, within AMB_RS08415 at 1801.240 kb on + strand, within AMB_RS08415 at 1801.241 kb on - strand, within AMB_RS08415 at 1801.397 kb on - strand, within AMB_RS08415 at 1801.460 kb on - strand, within AMB_RS08415
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 1,798,680 + AMB_RS08400 0.12 -1.4 1,798,680 + AMB_RS08400 0.12 -0.6 1,798,680 + AMB_RS08400 0.12 +0.3 1,798,681 - AMB_RS08400 0.13 -0.6 1,798,681 - AMB_RS08400 0.13 -2.4 1,799,065 - AMB_RS08400 0.56 -0.1 1,799,164 - AMB_RS08400 0.68 -0.9 1,799,256 + AMB_RS08400 0.78 -1.6 1,799,256 + AMB_RS08400 0.78 -0.6 1,799,257 - AMB_RS08400 0.78 -2.8 1,799,257 - AMB_RS08400 0.78 -0.1 1,799,289 + AMB_RS08400 0.82 -1.9 1,799,289 + AMB_RS08400 0.82 -1.1 1,799,290 - AMB_RS08400 0.82 +0.0 1,799,290 - AMB_RS08400 0.82 -2.0 1,799,690 + AMB_RS08405 0.13 +1.4 1,799,718 - AMB_RS08405 0.16 -3.0 1,800,023 + AMB_RS08405 0.48 -0.4 1,800,024 - AMB_RS08405 0.48 -0.2 1,800,024 - AMB_RS08405 0.48 +1.4 1,800,024 - AMB_RS08405 0.48 -0.4 1,800,024 - AMB_RS08405 0.48 +0.1 1,800,024 - AMB_RS08405 0.48 -0.9 1,800,473 + +0.1 1,800,473 + -1.5 1,800,473 + -1.7 1,800,474 - -1.4 1,800,609 + -0.8 1,800,609 + -2.5 1,800,610 - +0.2 1,800,610 - +0.7 1,800,787 + AMB_RS08410 0.42 -0.1 1,800,787 + AMB_RS08410 0.42 -0.9 1,800,788 - AMB_RS08410 0.43 -0.6 1,800,788 - AMB_RS08410 0.43 -3.2 1,800,788 - AMB_RS08410 0.43 +0.5 1,800,788 - AMB_RS08410 0.43 -0.5 1,800,788 - AMB_RS08410 0.43 -0.3 1,800,788 - AMB_RS08410 0.43 -0.3 1,800,970 + AMB_RS08410 0.86 +0.4 1,800,970 + AMB_RS08410 0.86 -0.0 1,800,971 - AMB_RS08410 0.87 -0.9 1,800,971 - AMB_RS08410 0.87 +0.3 1,800,971 - AMB_RS08410 0.87 -1.4 1,800,971 - AMB_RS08410 0.87 +0.0 1,800,971 - AMB_RS08410 0.87 -0.9 1,801,048 - -0.0 1,801,132 - -0.6 1,801,193 - AMB_RS08415 0.15 -1.1 1,801,193 - AMB_RS08415 0.15 -0.9 1,801,240 + AMB_RS08415 0.24 -0.6 1,801,240 + AMB_RS08415 0.24 +0.9 1,801,241 - AMB_RS08415 0.25 +0.4 1,801,397 - AMB_RS08415 0.56 -0.1 1,801,460 - AMB_RS08415 0.69 +0.4
Or see this region's nucleotide sequence