Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06415

Experiment: 30_an_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS06405 and AMB_RS06410 overlap by 4 nucleotidesAMB_RS06410 and AMB_RS06415 are separated by 65 nucleotidesAMB_RS06415 and AMB_RS06420 are separated by 60 nucleotides AMB_RS06405: AMB_RS06405 - hypothetical protein, at 1,345,315 to 1,346,361 _RS06405 AMB_RS06410: AMB_RS06410 - metal-sulfur cluster assembly factor, at 1,346,358 to 1,346,663 _RS06410 AMB_RS06415: AMB_RS06415 - PAS domain S-box protein, at 1,346,729 to 1,348,735 _RS06415 AMB_RS06420: AMB_RS06420 - dihydroorotase, at 1,348,796 to 1,350,127 _RS06420 Position (kb) 1346 1347 1348 1349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1346.153 kb on + strand, within AMB_RS06405at 1346.501 kb on - strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.695 kb on + strandat 1346.696 kb on - strandat 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.215 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.271 kb on - strand, within AMB_RS06415at 1347.271 kb on - strand, within AMB_RS06415at 1347.375 kb on + strand, within AMB_RS06415at 1348.011 kb on + strand, within AMB_RS06415at 1348.011 kb on + strand, within AMB_RS06415at 1348.011 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.083 kb on + strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.084 kb on - strand, within AMB_RS06415at 1348.350 kb on + strand, within AMB_RS06415at 1348.351 kb on - strand, within AMB_RS06415at 1348.351 kb on - strand, within AMB_RS06415at 1348.369 kb on + strand, within AMB_RS06415at 1348.370 kb on - strand, within AMB_RS06415at 1348.390 kb on - strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.440 kb on + strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.441 kb on - strand, within AMB_RS06415at 1348.704 kb on + strandat 1348.704 kb on + strandat 1348.704 kb on + strandat 1348.704 kb on + strandat 1348.705 kb on - strandat 1348.705 kb on - strandat 1348.705 kb on - strandat 1348.705 kb on - strandat 1348.798 kb on - strandat 1348.798 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
remove
1,346,153 + AMB_RS06405 0.80 -3.4
1,346,501 - AMB_RS06410 0.47 +0.1
1,346,545 + AMB_RS06410 0.61 +0.4
1,346,545 + AMB_RS06410 0.61 -0.6
1,346,545 + AMB_RS06410 0.61 -2.4
1,346,546 - AMB_RS06410 0.61 -1.1
1,346,546 - AMB_RS06410 0.61 -1.1
1,346,546 - AMB_RS06410 0.61 -2.9
1,346,546 - AMB_RS06410 0.61 +0.9
1,346,546 - AMB_RS06410 0.61 -0.6
1,346,546 - AMB_RS06410 0.61 -1.4
1,346,546 - AMB_RS06410 0.61 -2.1
1,346,695 + -1.4
1,346,696 - +0.8
1,347,006 + AMB_RS06415 0.14 -1.7
1,347,006 + AMB_RS06415 0.14 -1.1
1,347,006 + AMB_RS06415 0.14 -0.9
1,347,006 + AMB_RS06415 0.14 +0.4
1,347,007 - AMB_RS06415 0.14 -0.6
1,347,007 - AMB_RS06415 0.14 +0.1
1,347,007 - AMB_RS06415 0.14 -0.0
1,347,007 - AMB_RS06415 0.14 -1.1
1,347,215 + AMB_RS06415 0.24 -2.1
1,347,261 + AMB_RS06415 0.27 -0.9
1,347,261 + AMB_RS06415 0.27 -3.1
1,347,261 + AMB_RS06415 0.27 +0.6
1,347,261 + AMB_RS06415 0.27 +0.4
1,347,261 + AMB_RS06415 0.27 -1.7
1,347,262 - AMB_RS06415 0.27 +0.4
1,347,262 - AMB_RS06415 0.27 -0.3
1,347,262 - AMB_RS06415 0.27 +0.5
1,347,262 - AMB_RS06415 0.27 -0.4
1,347,262 - AMB_RS06415 0.27 +0.3
1,347,262 - AMB_RS06415 0.27 +1.0
1,347,268 + AMB_RS06415 0.27 -0.1
1,347,268 + AMB_RS06415 0.27 +0.2
1,347,268 + AMB_RS06415 0.27 +0.2
1,347,268 + AMB_RS06415 0.27 -2.5
1,347,269 - AMB_RS06415 0.27 -1.6
1,347,269 - AMB_RS06415 0.27 +0.4
1,347,269 - AMB_RS06415 0.27 -0.1
1,347,269 - AMB_RS06415 0.27 -1.1
1,347,269 - AMB_RS06415 0.27 +0.2
1,347,270 + AMB_RS06415 0.27 +0.4
1,347,270 + AMB_RS06415 0.27 +0.1
1,347,270 + AMB_RS06415 0.27 +0.7
1,347,270 + AMB_RS06415 0.27 +1.3
1,347,271 - AMB_RS06415 0.27 -1.7
1,347,271 - AMB_RS06415 0.27 -1.1
1,347,375 + AMB_RS06415 0.32 -1.6
1,348,011 + AMB_RS06415 0.64 -1.3
1,348,011 + AMB_RS06415 0.64 -1.1
1,348,011 + AMB_RS06415 0.64 -4.0
1,348,083 + AMB_RS06415 0.67 +0.6
1,348,083 + AMB_RS06415 0.67 +0.4
1,348,083 + AMB_RS06415 0.67 -2.4
1,348,083 + AMB_RS06415 0.67 -1.6
1,348,083 + AMB_RS06415 0.67 +0.2
1,348,084 - AMB_RS06415 0.68 -0.1
1,348,084 - AMB_RS06415 0.68 -2.4
1,348,084 - AMB_RS06415 0.68 +1.3
1,348,084 - AMB_RS06415 0.68 +1.4
1,348,084 - AMB_RS06415 0.68 -3.6
1,348,350 + AMB_RS06415 0.81 -3.7
1,348,351 - AMB_RS06415 0.81 +0.8
1,348,351 - AMB_RS06415 0.81 -0.1
1,348,369 + AMB_RS06415 0.82 -0.9
1,348,370 - AMB_RS06415 0.82 -2.5
1,348,390 - AMB_RS06415 0.83 -1.2
1,348,440 + AMB_RS06415 0.85 -0.0
1,348,440 + AMB_RS06415 0.85 -0.6
1,348,440 + AMB_RS06415 0.85 -0.2
1,348,440 + AMB_RS06415 0.85 -2.4
1,348,440 + AMB_RS06415 0.85 -2.1
1,348,440 + AMB_RS06415 0.85 +2.1
1,348,440 + AMB_RS06415 0.85 -0.2
1,348,441 - AMB_RS06415 0.85 +0.3
1,348,441 - AMB_RS06415 0.85 -0.6
1,348,441 - AMB_RS06415 0.85 -0.8
1,348,441 - AMB_RS06415 0.85 -2.0
1,348,441 - AMB_RS06415 0.85 -3.5
1,348,441 - AMB_RS06415 0.85 -0.3
1,348,441 - AMB_RS06415 0.85 +0.7
1,348,441 - AMB_RS06415 0.85 -0.1
1,348,441 - AMB_RS06415 0.85 +3.5
1,348,441 - AMB_RS06415 0.85 +1.0
1,348,441 - AMB_RS06415 0.85 -0.1
1,348,704 + +0.3
1,348,704 + -0.2
1,348,704 + -2.5
1,348,704 + -0.9
1,348,705 - -0.6
1,348,705 - -2.1
1,348,705 - -2.3
1,348,705 - -0.2
1,348,798 - -1.1
1,348,798 - -1.7

Or see this region's nucleotide sequence