Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05855

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05845 and AMB_RS05850 are separated by 10 nucleotidesAMB_RS05850 and AMB_RS05855 overlap by 4 nucleotidesAMB_RS05855 and AMB_RS05860 are separated by 2 nucleotidesAMB_RS05860 and AMB_RS05865 are separated by 4 nucleotides AMB_RS05845: AMB_RS05845 - hypothetical protein, at 1,232,610 to 1,232,966 _RS05845 AMB_RS05850: AMB_RS05850 - hypothetical protein, at 1,232,977 to 1,233,774 _RS05850 AMB_RS05855: AMB_RS05855 - P-loop ATPase and inactivated derivative, at 1,233,771 to 1,236,287 _RS05855 AMB_RS05860: AMB_RS05860 - hypothetical protein, at 1,236,290 to 1,236,961 _RS05860 AMB_RS05865: AMB_RS05865 - hypothetical protein, at 1,236,966 to 1,237,538 _RS05865 Position (kb) 1233 1234 1235 1236 1237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1232.889 kb on + strand, within AMB_RS05845at 1232.890 kb on - strand, within AMB_RS05845at 1233.010 kb on + strandat 1233.109 kb on + strand, within AMB_RS05850at 1233.109 kb on + strand, within AMB_RS05850at 1233.110 kb on - strand, within AMB_RS05850at 1233.110 kb on - strand, within AMB_RS05850at 1233.157 kb on + strand, within AMB_RS05850at 1233.158 kb on - strand, within AMB_RS05850at 1233.163 kb on + strand, within AMB_RS05850at 1233.392 kb on - strand, within AMB_RS05850at 1233.478 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.824 kb on + strandat 1233.959 kb on + strandat 1233.960 kb on - strandat 1233.960 kb on - strandat 1233.960 kb on - strandat 1234.108 kb on + strand, within AMB_RS05855at 1234.109 kb on - strand, within AMB_RS05855at 1234.109 kb on - strand, within AMB_RS05855at 1234.109 kb on - strand, within AMB_RS05855at 1234.167 kb on - strand, within AMB_RS05855at 1234.212 kb on + strand, within AMB_RS05855at 1234.212 kb on + strand, within AMB_RS05855at 1234.212 kb on + strand, within AMB_RS05855at 1234.213 kb on - strand, within AMB_RS05855at 1234.584 kb on - strand, within AMB_RS05855at 1234.749 kb on + strand, within AMB_RS05855at 1234.750 kb on - strand, within AMB_RS05855at 1234.750 kb on - strand, within AMB_RS05855at 1234.803 kb on + strand, within AMB_RS05855at 1234.803 kb on + strand, within AMB_RS05855at 1234.803 kb on - strand, within AMB_RS05855at 1234.804 kb on - strand, within AMB_RS05855at 1234.866 kb on - strand, within AMB_RS05855at 1234.909 kb on + strand, within AMB_RS05855at 1234.910 kb on - strand, within AMB_RS05855at 1234.910 kb on - strand, within AMB_RS05855at 1235.183 kb on + strand, within AMB_RS05855at 1235.183 kb on + strand, within AMB_RS05855at 1235.183 kb on + strand, within AMB_RS05855at 1235.183 kb on + strand, within AMB_RS05855at 1235.184 kb on - strand, within AMB_RS05855at 1235.184 kb on - strand, within AMB_RS05855at 1235.184 kb on - strand, within AMB_RS05855at 1235.184 kb on - strand, within AMB_RS05855at 1235.184 kb on - strand, within AMB_RS05855at 1235.272 kb on + strand, within AMB_RS05855at 1235.273 kb on - strand, within AMB_RS05855at 1235.331 kb on + strand, within AMB_RS05855at 1235.344 kb on + strand, within AMB_RS05855at 1235.345 kb on - strand, within AMB_RS05855at 1235.721 kb on + strand, within AMB_RS05855at 1235.721 kb on + strand, within AMB_RS05855at 1235.721 kb on + strand, within AMB_RS05855at 1235.721 kb on + strand, within AMB_RS05855at 1235.721 kb on + strand, within AMB_RS05855at 1235.722 kb on - strand, within AMB_RS05855at 1235.722 kb on - strand, within AMB_RS05855at 1235.722 kb on - strand, within AMB_RS05855at 1235.722 kb on - strand, within AMB_RS05855at 1235.730 kb on + strand, within AMB_RS05855at 1235.730 kb on + strand, within AMB_RS05855at 1235.730 kb on + strand, within AMB_RS05855at 1235.730 kb on + strand, within AMB_RS05855at 1235.731 kb on - strand, within AMB_RS05855at 1235.731 kb on - strand, within AMB_RS05855at 1235.758 kb on + strand, within AMB_RS05855at 1235.758 kb on + strand, within AMB_RS05855at 1235.787 kb on + strand, within AMB_RS05855at 1235.787 kb on + strand, within AMB_RS05855at 1235.788 kb on - strand, within AMB_RS05855at 1235.788 kb on - strand, within AMB_RS05855at 1235.891 kb on + strand, within AMB_RS05855at 1235.901 kb on + strand, within AMB_RS05855at 1235.901 kb on + strand, within AMB_RS05855at 1235.902 kb on - strand, within AMB_RS05855at 1235.902 kb on - strand, within AMB_RS05855at 1235.926 kb on + strand, within AMB_RS05855at 1236.042 kb on + strandat 1236.042 kb on + strandat 1236.042 kb on + strandat 1236.042 kb on + strandat 1236.043 kb on - strandat 1236.043 kb on - strandat 1236.043 kb on - strandat 1236.048 kb on + strandat 1236.057 kb on + strandat 1236.145 kb on + strandat 1236.193 kb on - strandat 1236.268 kb on - strandat 1236.268 kb on - strandat 1236.292 kb on - strandat 1236.292 kb on - strandat 1236.323 kb on - strandat 1236.332 kb on + strandat 1236.338 kb on - strandat 1236.372 kb on + strand, within AMB_RS05860at 1236.372 kb on + strand, within AMB_RS05860at 1236.373 kb on - strand, within AMB_RS05860at 1236.373 kb on - strand, within AMB_RS05860at 1236.413 kb on - strand, within AMB_RS05860at 1236.437 kb on + strand, within AMB_RS05860at 1236.437 kb on + strand, within AMB_RS05860at 1236.438 kb on - strand, within AMB_RS05860at 1236.460 kb on + strand, within AMB_RS05860at 1236.513 kb on + strand, within AMB_RS05860at 1236.514 kb on - strand, within AMB_RS05860at 1236.514 kb on - strand, within AMB_RS05860at 1236.514 kb on - strand, within AMB_RS05860at 1236.514 kb on - strand, within AMB_RS05860at 1236.557 kb on - strand, within AMB_RS05860at 1236.557 kb on - strand, within AMB_RS05860at 1236.558 kb on + strand, within AMB_RS05860at 1236.559 kb on - strand, within AMB_RS05860at 1236.559 kb on - strand, within AMB_RS05860at 1236.618 kb on + strand, within AMB_RS05860at 1236.693 kb on + strand, within AMB_RS05860at 1236.809 kb on + strand, within AMB_RS05860at 1236.810 kb on - strand, within AMB_RS05860at 1236.810 kb on - strand, within AMB_RS05860at 1236.810 kb on - strand, within AMB_RS05860at 1236.810 kb on - strand, within AMB_RS05860at 1236.866 kb on + strand, within AMB_RS05860at 1236.866 kb on + strand, within AMB_RS05860at 1237.183 kb on - strand, within AMB_RS05865at 1237.183 kb on - strand, within AMB_RS05865at 1237.193 kb on + strand, within AMB_RS05865at 1237.193 kb on + strand, within AMB_RS05865at 1237.194 kb on - strand, within AMB_RS05865at 1237.194 kb on - strand, within AMB_RS05865at 1237.194 kb on - strand, within AMB_RS05865

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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1,232,889 + AMB_RS05845 0.78 -0.5
1,232,890 - AMB_RS05845 0.78 -1.5
1,233,010 + -0.1
1,233,109 + AMB_RS05850 0.17 -0.1
1,233,109 + AMB_RS05850 0.17 -1.8
1,233,110 - AMB_RS05850 0.17 -3.4
1,233,110 - AMB_RS05850 0.17 -1.7
1,233,157 + AMB_RS05850 0.23 +1.0
1,233,158 - AMB_RS05850 0.23 -1.1
1,233,163 + AMB_RS05850 0.23 -0.5
1,233,392 - AMB_RS05850 0.52 -0.9
1,233,478 + AMB_RS05850 0.63 -1.1
1,233,508 + AMB_RS05850 0.67 +0.2
1,233,508 + AMB_RS05850 0.67 -1.0
1,233,508 + AMB_RS05850 0.67 -2.3
1,233,508 + AMB_RS05850 0.67 -0.2
1,233,508 + AMB_RS05850 0.67 -1.5
1,233,508 + AMB_RS05850 0.67 -4.3
1,233,509 - AMB_RS05850 0.67 +0.3
1,233,509 - AMB_RS05850 0.67 -1.9
1,233,509 - AMB_RS05850 0.67 -1.9
1,233,509 - AMB_RS05850 0.67 -0.8
1,233,509 - AMB_RS05850 0.67 +0.6
1,233,824 + -0.6
1,233,959 + -1.5
1,233,960 - -1.1
1,233,960 - +1.3
1,233,960 - -0.7
1,234,108 + AMB_RS05855 0.13 -0.9
1,234,109 - AMB_RS05855 0.13 -1.5
1,234,109 - AMB_RS05855 0.13 -1.4
1,234,109 - AMB_RS05855 0.13 -0.6
1,234,167 - AMB_RS05855 0.16 +1.8
1,234,212 + AMB_RS05855 0.18 -2.1
1,234,212 + AMB_RS05855 0.18 +0.4
1,234,212 + AMB_RS05855 0.18 -1.7
1,234,213 - AMB_RS05855 0.18 -0.5
1,234,584 - AMB_RS05855 0.32 +0.0
1,234,749 + AMB_RS05855 0.39 -0.9
1,234,750 - AMB_RS05855 0.39 -2.1
1,234,750 - AMB_RS05855 0.39 -3.1
1,234,803 + AMB_RS05855 0.41 +1.4
1,234,803 + AMB_RS05855 0.41 -1.4
1,234,803 - AMB_RS05855 0.41 -0.9
1,234,804 - AMB_RS05855 0.41 -3.5
1,234,866 - AMB_RS05855 0.44 -1.6
1,234,909 + AMB_RS05855 0.45 -0.1
1,234,910 - AMB_RS05855 0.45 -1.6
1,234,910 - AMB_RS05855 0.45 -1.6
1,235,183 + AMB_RS05855 0.56 +1.3
1,235,183 + AMB_RS05855 0.56 +0.1
1,235,183 + AMB_RS05855 0.56 -2.5
1,235,183 + AMB_RS05855 0.56 -1.1
1,235,184 - AMB_RS05855 0.56 -0.2
1,235,184 - AMB_RS05855 0.56 +0.6
1,235,184 - AMB_RS05855 0.56 -0.5
1,235,184 - AMB_RS05855 0.56 -0.6
1,235,184 - AMB_RS05855 0.56 -0.0
1,235,272 + AMB_RS05855 0.60 -4.1
1,235,273 - AMB_RS05855 0.60 -4.4
1,235,331 + AMB_RS05855 0.62 -0.1
1,235,344 + AMB_RS05855 0.62 -1.8
1,235,345 - AMB_RS05855 0.63 +0.4
1,235,721 + AMB_RS05855 0.77 +1.4
1,235,721 + AMB_RS05855 0.77 -1.6
1,235,721 + AMB_RS05855 0.77 -0.4
1,235,721 + AMB_RS05855 0.77 +0.5
1,235,721 + AMB_RS05855 0.77 -2.1
1,235,722 - AMB_RS05855 0.78 -1.7
1,235,722 - AMB_RS05855 0.78 +0.0
1,235,722 - AMB_RS05855 0.78 +0.3
1,235,722 - AMB_RS05855 0.78 +0.4
1,235,730 + AMB_RS05855 0.78 -3.0
1,235,730 + AMB_RS05855 0.78 +1.0
1,235,730 + AMB_RS05855 0.78 +0.4
1,235,730 + AMB_RS05855 0.78 -0.9
1,235,731 - AMB_RS05855 0.78 +0.6
1,235,731 - AMB_RS05855 0.78 +0.6
1,235,758 + AMB_RS05855 0.79 -0.4
1,235,758 + AMB_RS05855 0.79 -0.1
1,235,787 + AMB_RS05855 0.80 -0.3
1,235,787 + AMB_RS05855 0.80 -0.1
1,235,788 - AMB_RS05855 0.80 -0.8
1,235,788 - AMB_RS05855 0.80 -1.8
1,235,891 + AMB_RS05855 0.84 -0.9
1,235,901 + AMB_RS05855 0.85 -0.9
1,235,901 + AMB_RS05855 0.85 -1.7
1,235,902 - AMB_RS05855 0.85 -3.3
1,235,902 - AMB_RS05855 0.85 +0.4
1,235,926 + AMB_RS05855 0.86 +0.8
1,236,042 + -1.9
1,236,042 + -0.9
1,236,042 + +0.1
1,236,042 + +0.0
1,236,043 - +0.2
1,236,043 - +0.3
1,236,043 - -0.2
1,236,048 + +0.0
1,236,057 + +0.6
1,236,145 + -0.8
1,236,193 - +0.4
1,236,268 - +0.4
1,236,268 - -1.0
1,236,292 - -0.6
1,236,292 - -2.3
1,236,323 - +0.4
1,236,332 + -0.8
1,236,338 - -2.8
1,236,372 + AMB_RS05860 0.12 -0.5
1,236,372 + AMB_RS05860 0.12 -1.1
1,236,373 - AMB_RS05860 0.12 -3.8
1,236,373 - AMB_RS05860 0.12 +0.9
1,236,413 - AMB_RS05860 0.18 -1.1
1,236,437 + AMB_RS05860 0.22 +0.4
1,236,437 + AMB_RS05860 0.22 -2.5
1,236,438 - AMB_RS05860 0.22 +0.2
1,236,460 + AMB_RS05860 0.25 -1.4
1,236,513 + AMB_RS05860 0.33 -2.5
1,236,514 - AMB_RS05860 0.33 -0.9
1,236,514 - AMB_RS05860 0.33 -0.6
1,236,514 - AMB_RS05860 0.33 -0.6
1,236,514 - AMB_RS05860 0.33 -0.3
1,236,557 - AMB_RS05860 0.40 +0.4
1,236,557 - AMB_RS05860 0.40 -1.4
1,236,558 + AMB_RS05860 0.40 -1.7
1,236,559 - AMB_RS05860 0.40 -2.4
1,236,559 - AMB_RS05860 0.40 +0.3
1,236,618 + AMB_RS05860 0.49 +0.4
1,236,693 + AMB_RS05860 0.60 +0.2
1,236,809 + AMB_RS05860 0.77 -2.4
1,236,810 - AMB_RS05860 0.77 -0.3
1,236,810 - AMB_RS05860 0.77 -0.1
1,236,810 - AMB_RS05860 0.77 +0.7
1,236,810 - AMB_RS05860 0.77 +0.1
1,236,866 + AMB_RS05860 0.86 -0.2
1,236,866 + AMB_RS05860 0.86 +0.1
1,237,183 - AMB_RS05865 0.38 -0.0
1,237,183 - AMB_RS05865 0.38 -1.9
1,237,193 + AMB_RS05865 0.40 +0.2
1,237,193 + AMB_RS05865 0.40 -0.3
1,237,194 - AMB_RS05865 0.40 -0.1
1,237,194 - AMB_RS05865 0.40 -1.6
1,237,194 - AMB_RS05865 0.40 -0.6

Or see this region's nucleotide sequence