Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05440

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23195 and AMB_RS05435 overlap by 4 nucleotidesAMB_RS05435 and AMB_RS05440 are separated by 129 nucleotidesAMB_RS05440 and AMB_RS05445 are separated by 154 nucleotides AMB_RS23195: AMB_RS23195 - ABC transporter ATP-binding protein, at 1,124,327 to 1,125,610 _RS23195 AMB_RS05435: AMB_RS05435 - ABC transporter permease, at 1,125,607 to 1,126,395 _RS05435 AMB_RS05440: AMB_RS05440 - hypothetical protein, at 1,126,525 to 1,127,946 _RS05440 AMB_RS05445: AMB_RS05445 - MBOAT family protein, at 1,128,101 to 1,129,525 _RS05445 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1125.528 kb on + strandat 1125.611 kb on - strandat 1125.820 kb on + strand, within AMB_RS05435at 1125.821 kb on - strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.923 kb on + strand, within AMB_RS05435at 1125.924 kb on - strand, within AMB_RS05435at 1125.924 kb on - strand, within AMB_RS05435at 1126.076 kb on + strand, within AMB_RS05435at 1126.395 kb on + strandat 1126.396 kb on - strandat 1126.445 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.474 kb on - strandat 1126.573 kb on - strandat 1126.752 kb on + strand, within AMB_RS05440at 1126.753 kb on - strand, within AMB_RS05440at 1126.874 kb on - strand, within AMB_RS05440at 1127.037 kb on + strand, within AMB_RS05440at 1127.038 kb on - strand, within AMB_RS05440at 1127.096 kb on + strand, within AMB_RS05440at 1127.097 kb on - strand, within AMB_RS05440at 1127.097 kb on - strand, within AMB_RS05440at 1127.134 kb on + strand, within AMB_RS05440at 1127.144 kb on + strand, within AMB_RS05440at 1127.145 kb on - strand, within AMB_RS05440at 1127.145 kb on - strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.162 kb on + strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.163 kb on - strand, within AMB_RS05440at 1127.173 kb on + strand, within AMB_RS05440at 1127.174 kb on - strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.485 kb on + strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.486 kb on - strand, within AMB_RS05440at 1127.528 kb on + strand, within AMB_RS05440at 1127.528 kb on + strand, within AMB_RS05440at 1127.529 kb on - strand, within AMB_RS05440at 1127.592 kb on - strand, within AMB_RS05440at 1127.601 kb on - strand, within AMB_RS05440at 1127.639 kb on - strand, within AMB_RS05440at 1127.639 kb on - strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.735 kb on + strand, within AMB_RS05440at 1127.736 kb on - strand, within AMB_RS05440at 1127.736 kb on - strand, within AMB_RS05440at 1127.736 kb on - strand, within AMB_RS05440at 1127.786 kb on + strand, within AMB_RS05440at 1127.792 kb on + strand, within AMB_RS05440at 1127.793 kb on - strand, within AMB_RS05440at 1127.793 kb on - strand, within AMB_RS05440at 1127.799 kb on + strand, within AMB_RS05440at 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.005 kb on + strandat 1128.006 kb on - strandat 1128.006 kb on - strandat 1128.006 kb on - strandat 1128.006 kb on - strandat 1128.114 kb on + strandat 1128.114 kb on + strandat 1128.114 kb on + strandat 1128.114 kb on + strandat 1128.115 kb on - strandat 1128.129 kb on + strandat 1128.129 kb on + strandat 1128.129 kb on + strandat 1128.129 kb on + strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.130 kb on - strandat 1128.185 kb on - strandat 1128.348 kb on + strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.349 kb on - strand, within AMB_RS05445at 1128.495 kb on - strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.636 kb on + strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.637 kb on - strand, within AMB_RS05445at 1128.642 kb on + strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.643 kb on - strand, within AMB_RS05445at 1128.711 kb on + strand, within AMB_RS05445at 1128.711 kb on + strand, within AMB_RS05445at 1128.799 kb on - strand, within AMB_RS05445at 1128.837 kb on + strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.838 kb on - strand, within AMB_RS05445at 1128.920 kb on + strand, within AMB_RS05445at 1128.920 kb on + strand, within AMB_RS05445at 1128.921 kb on - strand, within AMB_RS05445

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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1,125,528 + -1.3
1,125,611 - -3.6
1,125,820 + AMB_RS05435 0.27 -5.7
1,125,821 - AMB_RS05435 0.27 -3.4
1,125,923 + AMB_RS05435 0.40 -2.1
1,125,923 + AMB_RS05435 0.40 -4.3
1,125,923 + AMB_RS05435 0.40 -1.5
1,125,924 - AMB_RS05435 0.40 -0.1
1,125,924 - AMB_RS05435 0.40 -0.8
1,126,076 + AMB_RS05435 0.59 -1.7
1,126,395 + -2.1
1,126,396 - +0.4
1,126,445 - -2.3
1,126,474 - -1.1
1,126,474 - +0.7
1,126,474 - -1.1
1,126,474 - -0.8
1,126,474 - -0.1
1,126,573 - -0.7
1,126,752 + AMB_RS05440 0.16 -2.0
1,126,753 - AMB_RS05440 0.16 -1.3
1,126,874 - AMB_RS05440 0.25 -0.1
1,127,037 + AMB_RS05440 0.36 -1.7
1,127,038 - AMB_RS05440 0.36 -0.3
1,127,096 + AMB_RS05440 0.40 -1.7
1,127,097 - AMB_RS05440 0.40 -1.1
1,127,097 - AMB_RS05440 0.40 +0.3
1,127,134 + AMB_RS05440 0.43 -0.8
1,127,144 + AMB_RS05440 0.44 -0.1
1,127,145 - AMB_RS05440 0.44 +0.5
1,127,145 - AMB_RS05440 0.44 +0.1
1,127,162 + AMB_RS05440 0.45 -1.2
1,127,162 + AMB_RS05440 0.45 -2.5
1,127,162 + AMB_RS05440 0.45 -0.3
1,127,163 - AMB_RS05440 0.45 -1.1
1,127,163 - AMB_RS05440 0.45 -0.8
1,127,163 - AMB_RS05440 0.45 -0.3
1,127,173 + AMB_RS05440 0.46 +0.8
1,127,174 - AMB_RS05440 0.46 -3.0
1,127,485 + AMB_RS05440 0.68 -1.5
1,127,485 + AMB_RS05440 0.68 -0.1
1,127,485 + AMB_RS05440 0.68 -0.7
1,127,485 + AMB_RS05440 0.68 -2.2
1,127,485 + AMB_RS05440 0.68 +1.0
1,127,486 - AMB_RS05440 0.68 -2.4
1,127,486 - AMB_RS05440 0.68 -0.5
1,127,486 - AMB_RS05440 0.68 -1.5
1,127,486 - AMB_RS05440 0.68 +0.4
1,127,486 - AMB_RS05440 0.68 +0.5
1,127,528 + AMB_RS05440 0.71 -3.4
1,127,528 + AMB_RS05440 0.71 +0.4
1,127,529 - AMB_RS05440 0.71 +0.5
1,127,592 - AMB_RS05440 0.75 -1.7
1,127,601 - AMB_RS05440 0.76 -0.1
1,127,639 - AMB_RS05440 0.78 +0.1
1,127,639 - AMB_RS05440 0.78 -1.2
1,127,735 + AMB_RS05440 0.85 +1.5
1,127,735 + AMB_RS05440 0.85 -1.3
1,127,735 + AMB_RS05440 0.85 -0.7
1,127,735 + AMB_RS05440 0.85 -1.5
1,127,736 - AMB_RS05440 0.85 +1.2
1,127,736 - AMB_RS05440 0.85 +1.4
1,127,736 - AMB_RS05440 0.85 +0.5
1,127,786 + AMB_RS05440 0.89 -2.8
1,127,792 + AMB_RS05440 0.89 -2.9
1,127,793 - AMB_RS05440 0.89 +0.2
1,127,793 - AMB_RS05440 0.89 -0.5
1,127,799 + AMB_RS05440 0.90 +1.5
1,128,005 + -3.0
1,128,005 + -0.5
1,128,005 + -2.0
1,128,005 + -1.5
1,128,005 + -1.5
1,128,006 - +1.5
1,128,006 - +1.9
1,128,006 - +1.0
1,128,006 - +0.1
1,128,114 + -1.4
1,128,114 + -1.1
1,128,114 + -0.9
1,128,114 + -1.4
1,128,115 - -0.1
1,128,129 + +1.3
1,128,129 + -2.1
1,128,129 + -1.1
1,128,129 + -1.5
1,128,130 - -1.0
1,128,130 - -2.3
1,128,130 - +1.0
1,128,130 - -0.8
1,128,130 - +1.3
1,128,185 - +2.5
1,128,348 + AMB_RS05445 0.17 +0.4
1,128,349 - AMB_RS05445 0.17 -1.1
1,128,349 - AMB_RS05445 0.17 -0.1
1,128,349 - AMB_RS05445 0.17 -0.5
1,128,349 - AMB_RS05445 0.17 -2.0
1,128,495 - AMB_RS05445 0.28 +0.0
1,128,636 + AMB_RS05445 0.38 -0.2
1,128,636 + AMB_RS05445 0.38 +0.0
1,128,636 + AMB_RS05445 0.38 -0.5
1,128,636 + AMB_RS05445 0.38 -1.7
1,128,636 + AMB_RS05445 0.38 +0.5
1,128,636 + AMB_RS05445 0.38 -0.9
1,128,636 + AMB_RS05445 0.38 -1.9
1,128,636 + AMB_RS05445 0.38 -2.1
1,128,636 + AMB_RS05445 0.38 -0.1
1,128,636 + AMB_RS05445 0.38 -0.2
1,128,636 + AMB_RS05445 0.38 -0.5
1,128,636 + AMB_RS05445 0.38 -0.1
1,128,636 + AMB_RS05445 0.38 +0.7
1,128,636 + AMB_RS05445 0.38 +0.4
1,128,637 - AMB_RS05445 0.38 -3.1
1,128,637 - AMB_RS05445 0.38 +0.4
1,128,637 - AMB_RS05445 0.38 +0.5
1,128,637 - AMB_RS05445 0.38 -0.9
1,128,637 - AMB_RS05445 0.38 -2.5
1,128,637 - AMB_RS05445 0.38 +1.5
1,128,637 - AMB_RS05445 0.38 -2.4
1,128,637 - AMB_RS05445 0.38 -2.6
1,128,637 - AMB_RS05445 0.38 -1.1
1,128,637 - AMB_RS05445 0.38 -0.9
1,128,642 + AMB_RS05445 0.38 -1.2
1,128,643 - AMB_RS05445 0.38 +0.1
1,128,643 - AMB_RS05445 0.38 -1.7
1,128,643 - AMB_RS05445 0.38 -0.6
1,128,643 - AMB_RS05445 0.38 +1.5
1,128,711 + AMB_RS05445 0.43 -1.1
1,128,711 + AMB_RS05445 0.43 -0.7
1,128,799 - AMB_RS05445 0.49 -0.1
1,128,837 + AMB_RS05445 0.52 +0.0
1,128,838 - AMB_RS05445 0.52 -0.5
1,128,838 - AMB_RS05445 0.52 -2.0
1,128,838 - AMB_RS05445 0.52 -3.5
1,128,838 - AMB_RS05445 0.52 -1.2
1,128,920 + AMB_RS05445 0.57 +4.1
1,128,920 + AMB_RS05445 0.57 -0.4
1,128,921 - AMB_RS05445 0.58 -0.5

Or see this region's nucleotide sequence