Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04465 and AMB_RS04470 overlap by 4 nucleotides AMB_RS04470 and AMB_RS04475 are separated by 61 nucleotides AMB_RS04475 and AMB_RS04480 are separated by 2 nucleotides AMB_RS04480 and AMB_RS04485 are separated by 60 nucleotides
AMB_RS04465: AMB_RS04465 - ribonuclease R, at 935,904 to 938,132
_RS04465
AMB_RS04470: AMB_RS04470 - antibiotic acetyltransferase, at 938,129 to 938,812
_RS04470
AMB_RS04475: AMB_RS04475 - S41 family peptidase, at 938,874 to 940,430
_RS04475
AMB_RS04480: AMB_RS04480 - acyl-CoA dehydrogenase, at 940,433 to 941,263
_RS04480
AMB_RS04485: AMB_RS04485 - NAD(P)-dependent oxidoreductase, at 941,324 to 942,076
_RS04485
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 937.917 kb on + strand at 937.917 kb on + strand at 937.918 kb on - strand at 938.015 kb on + strand at 938.016 kb on - strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.168 kb on + strand at 938.169 kb on - strand at 938.169 kb on - strand at 938.169 kb on - strand at 938.297 kb on + strand, within AMB_RS04470 at 938.298 kb on - strand, within AMB_RS04470 at 938.298 kb on - strand, within AMB_RS04470 at 938.298 kb on - strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.303 kb on + strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.304 kb on - strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.305 kb on + strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.306 kb on - strand, within AMB_RS04470 at 938.351 kb on + strand, within AMB_RS04470 at 938.622 kb on - strand, within AMB_RS04470 at 938.622 kb on - strand, within AMB_RS04470 at 938.821 kb on + strand at 938.822 kb on - strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.845 kb on + strand at 938.846 kb on - strand at 939.240 kb on + strand, within AMB_RS04475 at 939.240 kb on + strand, within AMB_RS04475 at 939.240 kb on + strand, within AMB_RS04475 at 939.672 kb on + strand, within AMB_RS04475 at 939.673 kb on - strand, within AMB_RS04475 at 939.997 kb on - strand, within AMB_RS04475 at 940.266 kb on - strand, within AMB_RS04475 at 940.344 kb on + strand at 940.577 kb on + strand, within AMB_RS04480 at 940.577 kb on + strand, within AMB_RS04480 at 940.578 kb on - strand, within AMB_RS04480 at 941.013 kb on - strand, within AMB_RS04480 at 941.125 kb on + strand, within AMB_RS04480 at 941.125 kb on + strand, within AMB_RS04480 at 941.126 kb on - strand, within AMB_RS04480 at 941.261 kb on + strand at 941.261 kb on + strand at 941.262 kb on - strand at 941.262 kb on - strand at 941.262 kb on - strand at 941.264 kb on + strand at 941.264 kb on + strand at 941.265 kb on - strand at 941.371 kb on + strand at 941.371 kb on + strand at 941.371 kb on + strand at 941.372 kb on - strand at 941.372 kb on - strand at 941.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 937,917 + +0.8 937,917 + +0.1 937,918 - -0.3 938,015 + -1.8 938,016 - -2.7 938,168 + -0.8 938,168 + +0.1 938,168 + -2.1 938,168 + +0.2 938,168 + -0.3 938,168 + -2.3 938,169 - +0.4 938,169 - -0.1 938,169 - -1.1 938,297 + AMB_RS04470 0.25 -1.4 938,298 - AMB_RS04470 0.25 +0.2 938,298 - AMB_RS04470 0.25 -0.8 938,298 - AMB_RS04470 0.25 -1.1 938,303 + AMB_RS04470 0.25 -0.4 938,303 + AMB_RS04470 0.25 -2.2 938,303 + AMB_RS04470 0.25 +0.9 938,303 + AMB_RS04470 0.25 -2.1 938,303 + AMB_RS04470 0.25 +0.1 938,303 + AMB_RS04470 0.25 -0.0 938,303 + AMB_RS04470 0.25 -0.3 938,303 + AMB_RS04470 0.25 -0.2 938,303 + AMB_RS04470 0.25 -0.1 938,303 + AMB_RS04470 0.25 -0.8 938,303 + AMB_RS04470 0.25 +0.2 938,303 + AMB_RS04470 0.25 -1.1 938,304 - AMB_RS04470 0.26 -0.1 938,304 - AMB_RS04470 0.26 -2.3 938,304 - AMB_RS04470 0.26 -0.3 938,304 - AMB_RS04470 0.26 +0.0 938,304 - AMB_RS04470 0.26 +0.3 938,305 + AMB_RS04470 0.26 +0.0 938,305 + AMB_RS04470 0.26 -0.5 938,305 + AMB_RS04470 0.26 +0.1 938,305 + AMB_RS04470 0.26 +0.1 938,305 + AMB_RS04470 0.26 -2.8 938,306 - AMB_RS04470 0.26 -1.3 938,306 - AMB_RS04470 0.26 +0.4 938,306 - AMB_RS04470 0.26 -5.2 938,306 - AMB_RS04470 0.26 -2.1 938,306 - AMB_RS04470 0.26 -2.3 938,306 - AMB_RS04470 0.26 -1.1 938,306 - AMB_RS04470 0.26 -2.3 938,351 + AMB_RS04470 0.32 +0.1 938,622 - AMB_RS04470 0.72 -1.9 938,622 - AMB_RS04470 0.72 -0.7 938,821 + -1.7 938,822 - -0.5 938,845 + -4.6 938,845 + -0.3 938,845 + -0.7 938,845 + -0.2 938,845 + +0.5 938,846 - -0.4 939,240 + AMB_RS04475 0.24 -0.9 939,240 + AMB_RS04475 0.24 -0.5 939,240 + AMB_RS04475 0.24 -1.7 939,672 + AMB_RS04475 0.51 -1.6 939,673 - AMB_RS04475 0.51 -2.4 939,997 - AMB_RS04475 0.72 -0.7 940,266 - AMB_RS04475 0.89 -1.3 940,344 + -0.8 940,577 + AMB_RS04480 0.17 -0.1 940,577 + AMB_RS04480 0.17 -0.5 940,578 - AMB_RS04480 0.17 -1.2 941,013 - AMB_RS04480 0.70 -0.7 941,125 + AMB_RS04480 0.83 -0.9 941,125 + AMB_RS04480 0.83 -1.1 941,126 - AMB_RS04480 0.83 -1.8 941,261 + -2.3 941,261 + -1.5 941,262 - -0.4 941,262 - +0.5 941,262 - +1.4 941,264 + -2.2 941,264 + +1.5 941,265 - -0.5 941,371 + -0.3 941,371 + -2.7 941,371 + +0.2 941,372 - +0.5 941,372 - -0.9 941,372 - -1.1
Or see this region's nucleotide sequence