Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04190 and AMB_RS04195 overlap by 4 nucleotides AMB_RS04195 and AMB_RS04200 are separated by 21 nucleotides AMB_RS04200 and AMB_RS04205 are separated by 55 nucleotides
AMB_RS04190: AMB_RS04190 - hypothetical protein, at 880,540 to 882,999
_RS04190
AMB_RS04195: AMB_RS04195 - transglutaminase family protein, at 882,996 to 883,871
_RS04195
AMB_RS04200: AMB_RS04200 - hypothetical protein, at 883,893 to 884,099
_RS04200
AMB_RS04205: AMB_RS04205 - PAS domain-containing sensor histidine kinase, at 884,155 to 886,542
_RS04205
Position (kb) 882
883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 883.027 kb on - strand at 883.027 kb on - strand at 883.032 kb on + strand at 883.608 kb on + strand, within AMB_RS04195 at 883.870 kb on - strand at 883.870 kb on - strand at 883.900 kb on + strand at 884.030 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.032 kb on + strand, within AMB_RS04200 at 884.033 kb on - strand, within AMB_RS04200 at 884.033 kb on - strand, within AMB_RS04200 at 884.349 kb on + strand at 884.349 kb on + strand at 884.350 kb on - strand at 884.350 kb on - strand at 884.465 kb on + strand, within AMB_RS04205 at 884.466 kb on - strand, within AMB_RS04205 at 884.466 kb on - strand, within AMB_RS04205 at 884.466 kb on - strand, within AMB_RS04205 at 884.720 kb on + strand, within AMB_RS04205 at 884.720 kb on + strand, within AMB_RS04205 at 884.721 kb on - strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.786 kb on + strand, within AMB_RS04205 at 884.787 kb on - strand, within AMB_RS04205 at 884.787 kb on - strand, within AMB_RS04205 at 884.787 kb on - strand, within AMB_RS04205 at 884.834 kb on + strand, within AMB_RS04205 at 884.834 kb on + strand, within AMB_RS04205 at 884.834 kb on + strand, within AMB_RS04205 at 884.835 kb on - strand, within AMB_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 883,027 - +0.5 883,027 - -1.5 883,032 + -0.7 883,608 + AMB_RS04195 0.70 -0.8 883,870 - -0.8 883,870 - -1.8 883,900 + +0.8 884,030 + AMB_RS04200 0.66 -2.1 884,032 + AMB_RS04200 0.67 -0.5 884,032 + AMB_RS04200 0.67 -0.2 884,032 + AMB_RS04200 0.67 -1.3 884,032 + AMB_RS04200 0.67 -0.3 884,032 + AMB_RS04200 0.67 -0.1 884,032 + AMB_RS04200 0.67 -0.1 884,032 + AMB_RS04200 0.67 -2.9 884,033 - AMB_RS04200 0.68 +0.1 884,033 - AMB_RS04200 0.68 -1.5 884,349 + -0.8 884,349 + -1.1 884,350 - +1.5 884,350 - +0.9 884,465 + AMB_RS04205 0.13 -2.8 884,466 - AMB_RS04205 0.13 -1.3 884,466 - AMB_RS04205 0.13 -0.1 884,466 - AMB_RS04205 0.13 -1.8 884,720 + AMB_RS04205 0.24 -2.4 884,720 + AMB_RS04205 0.24 -0.5 884,721 - AMB_RS04205 0.24 +1.5 884,786 + AMB_RS04205 0.26 -1.1 884,786 + AMB_RS04205 0.26 -0.0 884,786 + AMB_RS04205 0.26 +3.9 884,786 + AMB_RS04205 0.26 +0.9 884,787 - AMB_RS04205 0.26 -1.1 884,787 - AMB_RS04205 0.26 -1.9 884,787 - AMB_RS04205 0.26 +0.4 884,834 + AMB_RS04205 0.28 -0.8 884,834 + AMB_RS04205 0.28 -2.1 884,834 + AMB_RS04205 0.28 -0.9 884,835 - AMB_RS04205 0.28 +0.4
Or see this region's nucleotide sequence