Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04055

Experiment: 30_an_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04050 and AMB_RS04055 are separated by 71 nucleotidesAMB_RS04055 and AMB_RS04060 are separated by 146 nucleotides AMB_RS04050: AMB_RS04050 - thiamine pyrophosphate-binding protein, at 847,342 to 849,183 _RS04050 AMB_RS04055: AMB_RS04055 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 849,255 to 850,427 _RS04055 AMB_RS04060: AMB_RS04060 - pyridoxal phosphate-dependent aminotransferase, at 850,574 to 851,740 _RS04060 Position (kb) 849 850 851Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 848.255 kb on - strand, within AMB_RS04050at 848.255 kb on - strand, within AMB_RS04050at 848.255 kb on - strand, within AMB_RS04050at 848.444 kb on - strand, within AMB_RS04050at 848.444 kb on - strand, within AMB_RS04050at 848.494 kb on + strand, within AMB_RS04050at 848.495 kb on - strand, within AMB_RS04050at 848.539 kb on - strand, within AMB_RS04050at 848.688 kb on + strand, within AMB_RS04050at 848.689 kb on - strand, within AMB_RS04050at 848.689 kb on - strand, within AMB_RS04050at 848.689 kb on - strand, within AMB_RS04050at 848.803 kb on + strand, within AMB_RS04050at 848.803 kb on + strand, within AMB_RS04050at 848.803 kb on + strand, within AMB_RS04050at 848.803 kb on + strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.804 kb on - strand, within AMB_RS04050at 848.821 kb on + strand, within AMB_RS04050at 848.821 kb on + strand, within AMB_RS04050at 848.822 kb on - strand, within AMB_RS04050at 848.908 kb on + strand, within AMB_RS04050at 849.016 kb on + strandat 849.017 kb on - strandat 849.017 kb on - strandat 849.017 kb on - strandat 849.026 kb on - strandat 849.026 kb on - strandat 849.026 kb on - strandat 849.036 kb on + strandat 849.036 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.070 kb on + strandat 849.071 kb on - strandat 849.071 kb on - strandat 849.071 kb on - strandat 849.071 kb on - strandat 849.071 kb on - strandat 849.071 kb on - strandat 849.077 kb on - strandat 849.077 kb on - strandat 849.224 kb on + strandat 849.224 kb on + strandat 849.224 kb on + strandat 849.224 kb on + strandat 849.225 kb on - strandat 849.225 kb on - strandat 849.225 kb on - strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.261 kb on + strandat 849.262 kb on - strandat 849.262 kb on - strandat 849.262 kb on - strandat 849.262 kb on - strandat 849.333 kb on + strandat 849.334 kb on - strandat 849.334 kb on - strandat 849.381 kb on + strand, within AMB_RS04055at 849.381 kb on + strand, within AMB_RS04055at 849.381 kb on + strand, within AMB_RS04055at 849.381 kb on + strand, within AMB_RS04055at 849.383 kb on + strand, within AMB_RS04055at 849.384 kb on - strand, within AMB_RS04055at 849.384 kb on - strand, within AMB_RS04055at 849.384 kb on - strand, within AMB_RS04055at 849.544 kb on - strand, within AMB_RS04055at 849.714 kb on + strand, within AMB_RS04055at 849.715 kb on - strand, within AMB_RS04055at 849.818 kb on + strand, within AMB_RS04055at 849.818 kb on + strand, within AMB_RS04055at 849.818 kb on + strand, within AMB_RS04055at 849.819 kb on - strand, within AMB_RS04055at 849.933 kb on + strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.934 kb on - strand, within AMB_RS04055at 849.957 kb on + strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.958 kb on - strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.987 kb on + strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 849.988 kb on - strand, within AMB_RS04055at 850.245 kb on - strand, within AMB_RS04055at 850.287 kb on + strand, within AMB_RS04055at 850.287 kb on + strand, within AMB_RS04055at 850.287 kb on + strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.288 kb on - strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.293 kb on + strand, within AMB_RS04055at 850.294 kb on - strand, within AMB_RS04055at 850.294 kb on - strand, within AMB_RS04055at 850.415 kb on + strandat 850.415 kb on + strandat 850.497 kb on + strandat 850.497 kb on + strandat 850.497 kb on + strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.498 kb on - strandat 850.501 kb on + strandat 850.561 kb on + strandat 850.562 kb on - strandat 850.776 kb on + strand, within AMB_RS04060at 850.777 kb on - strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 851.118 kb on + strand, within AMB_RS04060at 851.118 kb on + strand, within AMB_RS04060at 851.119 kb on - strand, within AMB_RS04060at 851.194 kb on - strand, within AMB_RS04060at 851.194 kb on - strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.353 kb on - strand, within AMB_RS04060at 851.353 kb on - strand, within AMB_RS04060at 851.378 kb on + strand, within AMB_RS04060at 851.378 kb on + strand, within AMB_RS04060at 851.379 kb on - strand, within AMB_RS04060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
remove
848,255 - AMB_RS04050 0.50 -0.6
848,255 - AMB_RS04050 0.50 +2.0
848,255 - AMB_RS04050 0.50 +0.5
848,444 - AMB_RS04050 0.60 -1.3
848,444 - AMB_RS04050 0.60 -0.7
848,494 + AMB_RS04050 0.63 -1.0
848,495 - AMB_RS04050 0.63 -1.0
848,539 - AMB_RS04050 0.65 -0.7
848,688 + AMB_RS04050 0.73 -2.3
848,689 - AMB_RS04050 0.73 -0.3
848,689 - AMB_RS04050 0.73 -0.3
848,689 - AMB_RS04050 0.73 -1.3
848,803 + AMB_RS04050 0.79 +0.3
848,803 + AMB_RS04050 0.79 -2.9
848,803 + AMB_RS04050 0.79 +0.3
848,803 + AMB_RS04050 0.79 -1.6
848,804 - AMB_RS04050 0.79 -2.5
848,804 - AMB_RS04050 0.79 -0.4
848,804 - AMB_RS04050 0.79 -0.0
848,804 - AMB_RS04050 0.79 +0.9
848,804 - AMB_RS04050 0.79 -0.0
848,804 - AMB_RS04050 0.79 -3.2
848,804 - AMB_RS04050 0.79 -1.6
848,821 + AMB_RS04050 0.80 +0.1
848,821 + AMB_RS04050 0.80 -0.2
848,822 - AMB_RS04050 0.80 -0.8
848,908 + AMB_RS04050 0.85 +0.3
849,016 + -0.8
849,017 - -0.1
849,017 - +0.3
849,017 - +0.2
849,026 - -1.9
849,026 - -2.4
849,026 - -0.0
849,036 + -2.6
849,036 + +0.1
849,070 + -2.0
849,070 + -2.5
849,070 + -1.0
849,070 + +0.0
849,070 + -0.1
849,070 + -0.0
849,070 + -2.8
849,070 + -2.2
849,070 + -1.8
849,070 + -2.2
849,070 + -0.0
849,070 + +1.5
849,070 + -0.0
849,071 - +0.5
849,071 - -2.6
849,071 - +0.9
849,071 - -2.5
849,071 - -2.5
849,071 - -0.9
849,077 - +0.1
849,077 - -0.5
849,224 + -0.1
849,224 + -2.2
849,224 + -1.5
849,224 + -2.9
849,225 - +0.5
849,225 - -0.3
849,225 - -0.5
849,261 + -2.8
849,261 + -4.0
849,261 + -1.2
849,261 + +0.7
849,261 + -0.6
849,261 + -1.9
849,261 + -1.0
849,261 + +0.3
849,262 - +0.1
849,262 - -1.3
849,262 - +0.5
849,262 - -1.5
849,333 + -1.0
849,334 - -1.8
849,334 - -1.8
849,381 + AMB_RS04055 0.11 +0.3
849,381 + AMB_RS04055 0.11 +0.7
849,381 + AMB_RS04055 0.11 -0.3
849,381 + AMB_RS04055 0.11 -2.4
849,383 + AMB_RS04055 0.11 -0.3
849,384 - AMB_RS04055 0.11 -1.5
849,384 - AMB_RS04055 0.11 -1.6
849,384 - AMB_RS04055 0.11 +0.2
849,544 - AMB_RS04055 0.25 -2.5
849,714 + AMB_RS04055 0.39 -0.1
849,715 - AMB_RS04055 0.39 -0.1
849,818 + AMB_RS04055 0.48 -0.5
849,818 + AMB_RS04055 0.48 +0.0
849,818 + AMB_RS04055 0.48 -0.5
849,819 - AMB_RS04055 0.48 -1.6
849,933 + AMB_RS04055 0.58 -0.3
849,934 - AMB_RS04055 0.58 +0.3
849,934 - AMB_RS04055 0.58 +0.4
849,934 - AMB_RS04055 0.58 -1.8
849,934 - AMB_RS04055 0.58 -1.6
849,957 + AMB_RS04055 0.60 -1.3
849,958 - AMB_RS04055 0.60 -2.5
849,958 - AMB_RS04055 0.60 -0.8
849,958 - AMB_RS04055 0.60 +0.5
849,958 - AMB_RS04055 0.60 -1.0
849,987 + AMB_RS04055 0.62 -1.0
849,987 + AMB_RS04055 0.62 -0.5
849,987 + AMB_RS04055 0.62 -0.5
849,987 + AMB_RS04055 0.62 -0.5
849,987 + AMB_RS04055 0.62 -1.3
849,987 + AMB_RS04055 0.62 +0.2
849,987 + AMB_RS04055 0.62 -0.8
849,987 + AMB_RS04055 0.62 -0.8
849,988 - AMB_RS04055 0.62 -2.8
849,988 - AMB_RS04055 0.62 -2.0
849,988 - AMB_RS04055 0.62 +1.5
849,988 - AMB_RS04055 0.62 -2.4
850,245 - AMB_RS04055 0.84 -4.2
850,287 + AMB_RS04055 0.88 -0.0
850,287 + AMB_RS04055 0.88 +0.6
850,287 + AMB_RS04055 0.88 -3.0
850,288 - AMB_RS04055 0.88 -0.5
850,288 - AMB_RS04055 0.88 +0.1
850,288 - AMB_RS04055 0.88 -2.0
850,288 - AMB_RS04055 0.88 +0.1
850,293 + AMB_RS04055 0.88 +0.2
850,293 + AMB_RS04055 0.88 -2.5
850,293 + AMB_RS04055 0.88 +0.4
850,293 + AMB_RS04055 0.88 +1.0
850,293 + AMB_RS04055 0.88 -2.5
850,293 + AMB_RS04055 0.88 -0.8
850,294 - AMB_RS04055 0.89 -1.3
850,294 - AMB_RS04055 0.89 -0.0
850,415 + -0.5
850,415 + -1.0
850,497 + +0.3
850,497 + -1.8
850,497 + -0.8
850,498 - -0.5
850,498 - +0.3
850,498 - -3.2
850,498 - +0.4
850,498 - +0.3
850,501 + -1.0
850,561 + +0.2
850,562 - -0.9
850,776 + AMB_RS04060 0.17 +0.1
850,777 - AMB_RS04060 0.17 -1.5
850,879 + AMB_RS04060 0.26 -1.9
850,879 + AMB_RS04060 0.26 -0.4
850,879 + AMB_RS04060 0.26 +0.5
850,880 - AMB_RS04060 0.26 -0.1
850,880 - AMB_RS04060 0.26 -0.0
850,880 - AMB_RS04060 0.26 +0.5
850,880 - AMB_RS04060 0.26 -0.0
850,881 + AMB_RS04060 0.26 -0.4
850,881 + AMB_RS04060 0.26 -1.4
850,881 + AMB_RS04060 0.26 -0.8
850,881 + AMB_RS04060 0.26 +0.3
850,881 + AMB_RS04060 0.26 -2.5
850,882 - AMB_RS04060 0.26 +0.5
850,882 - AMB_RS04060 0.26 -1.3
850,882 - AMB_RS04060 0.26 +0.2
850,882 - AMB_RS04060 0.26 +0.1
850,882 - AMB_RS04060 0.26 -0.5
851,118 + AMB_RS04060 0.47 -0.5
851,118 + AMB_RS04060 0.47 -2.4
851,119 - AMB_RS04060 0.47 -2.5
851,194 - AMB_RS04060 0.53 -1.5
851,194 - AMB_RS04060 0.53 -0.8
851,352 + AMB_RS04060 0.67 +0.2
851,352 + AMB_RS04060 0.67 -0.0
851,352 + AMB_RS04060 0.67 -1.3
851,352 + AMB_RS04060 0.67 +0.3
851,353 - AMB_RS04060 0.67 -1.0
851,353 - AMB_RS04060 0.67 -0.1
851,378 + AMB_RS04060 0.69 -0.7
851,378 + AMB_RS04060 0.69 +0.0
851,379 - AMB_RS04060 0.69 -1.1

Or see this region's nucleotide sequence