Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03685

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03680 and AMB_RS03685 are separated by 124 nucleotidesAMB_RS03685 and AMB_RS03690 overlap by 17 nucleotidesAMB_RS03690 and AMB_RS03695 are separated by 90 nucleotides AMB_RS03680: AMB_RS03680 - UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase, at 776,448 to 777,644 _RS03680 AMB_RS03685: AMB_RS03685 - spore coat polysaccharide biosynthesis protein F, at 777,769 to 778,533 _RS03685 AMB_RS03690: AMB_RS03690 - hypothetical protein, at 778,517 to 779,284 _RS03690 AMB_RS03695: AMB_RS03695 - NADP-dependent malic enzyme, at 779,375 to 781,657 _RS03695 Position (kb) 777 778 779Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 777.180 kb on + strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.180 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.183 kb on + strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.184 kb on - strand, within AMB_RS03680at 777.210 kb on + strand, within AMB_RS03680at 777.210 kb on + strand, within AMB_RS03680at 777.211 kb on - strand, within AMB_RS03680at 777.304 kb on - strand, within AMB_RS03680at 777.337 kb on + strand, within AMB_RS03680at 777.337 kb on + strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.338 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.400 kb on - strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.474 kb on + strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.475 kb on - strand, within AMB_RS03680at 777.498 kb on + strand, within AMB_RS03680at 777.498 kb on + strand, within AMB_RS03680at 777.498 kb on + strand, within AMB_RS03680at 777.499 kb on - strand, within AMB_RS03680at 777.499 kb on - strand, within AMB_RS03680at 777.501 kb on + strand, within AMB_RS03680at 777.502 kb on - strand, within AMB_RS03680at 777.502 kb on - strand, within AMB_RS03680at 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.546 kb on + strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.547 kb on - strandat 777.549 kb on + strandat 777.549 kb on + strandat 777.550 kb on - strandat 777.653 kb on - strandat 778.012 kb on + strand, within AMB_RS03685at 778.012 kb on + strand, within AMB_RS03685at 778.012 kb on + strand, within AMB_RS03685at 778.012 kb on + strand, within AMB_RS03685at 778.013 kb on - strand, within AMB_RS03685at 778.135 kb on + strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.136 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.144 kb on - strand, within AMB_RS03685at 778.297 kb on - strand, within AMB_RS03685at 778.297 kb on - strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.360 kb on + strand, within AMB_RS03685at 778.361 kb on - strand, within AMB_RS03685at 778.361 kb on - strand, within AMB_RS03685at 778.361 kb on - strand, within AMB_RS03685at 778.551 kb on + strandat 778.551 kb on + strandat 778.677 kb on + strand, within AMB_RS03690at 778.677 kb on + strand, within AMB_RS03690at 778.677 kb on + strand, within AMB_RS03690at 778.677 kb on + strand, within AMB_RS03690at 778.677 kb on + strand, within AMB_RS03690at 778.678 kb on - strand, within AMB_RS03690at 778.678 kb on - strand, within AMB_RS03690at 778.678 kb on - strand, within AMB_RS03690at 778.678 kb on - strand, within AMB_RS03690at 778.678 kb on - strand, within AMB_RS03690at 778.681 kb on + strand, within AMB_RS03690at 778.682 kb on - strand, within AMB_RS03690at 778.682 kb on - strand, within AMB_RS03690at 778.903 kb on - strand, within AMB_RS03690at 779.064 kb on + strand, within AMB_RS03690at 779.064 kb on + strand, within AMB_RS03690at 779.064 kb on + strand, within AMB_RS03690at 779.065 kb on - strand, within AMB_RS03690at 779.065 kb on - strand, within AMB_RS03690at 779.065 kb on - strand, within AMB_RS03690at 779.065 kb on - strand, within AMB_RS03690at 779.105 kb on - strand, within AMB_RS03690at 779.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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777,180 + AMB_RS03680 0.61 +1.6
777,180 + AMB_RS03680 0.61 +0.6
777,180 + AMB_RS03680 0.61 -0.7
777,183 + AMB_RS03680 0.61 -1.4
777,183 + AMB_RS03680 0.61 -1.0
777,183 + AMB_RS03680 0.61 +0.0
777,184 - AMB_RS03680 0.61 +0.2
777,184 - AMB_RS03680 0.61 -1.6
777,184 - AMB_RS03680 0.61 +0.6
777,184 - AMB_RS03680 0.61 -0.9
777,184 - AMB_RS03680 0.61 -0.5
777,210 + AMB_RS03680 0.64 -2.3
777,210 + AMB_RS03680 0.64 -1.9
777,211 - AMB_RS03680 0.64 -1.6
777,304 - AMB_RS03680 0.72 +0.0
777,337 + AMB_RS03680 0.74 -2.9
777,337 + AMB_RS03680 0.74 +0.7
777,338 - AMB_RS03680 0.74 -0.1
777,338 - AMB_RS03680 0.74 +0.6
777,338 - AMB_RS03680 0.74 -3.6
777,400 - AMB_RS03680 0.80 -0.7
777,400 - AMB_RS03680 0.80 -0.7
777,400 - AMB_RS03680 0.80 -1.2
777,400 - AMB_RS03680 0.80 +0.2
777,474 + AMB_RS03680 0.86 -2.1
777,474 + AMB_RS03680 0.86 +0.8
777,474 + AMB_RS03680 0.86 -1.0
777,474 + AMB_RS03680 0.86 -1.7
777,474 + AMB_RS03680 0.86 -0.4
777,474 + AMB_RS03680 0.86 +0.2
777,474 + AMB_RS03680 0.86 -1.2
777,474 + AMB_RS03680 0.86 -2.3
777,474 + AMB_RS03680 0.86 -1.0
777,474 + AMB_RS03680 0.86 -1.8
777,474 + AMB_RS03680 0.86 -0.4
777,474 + AMB_RS03680 0.86 -1.6
777,474 + AMB_RS03680 0.86 -1.7
777,474 + AMB_RS03680 0.86 +0.6
777,474 + AMB_RS03680 0.86 +0.3
777,474 + AMB_RS03680 0.86 -1.3
777,474 + AMB_RS03680 0.86 +1.4
777,474 + AMB_RS03680 0.86 +0.6
777,474 + AMB_RS03680 0.86 -0.7
777,474 + AMB_RS03680 0.86 +0.1
777,474 + AMB_RS03680 0.86 -1.4
777,475 - AMB_RS03680 0.86 -1.2
777,475 - AMB_RS03680 0.86 +0.1
777,475 - AMB_RS03680 0.86 -1.7
777,475 - AMB_RS03680 0.86 -1.7
777,475 - AMB_RS03680 0.86 -1.4
777,475 - AMB_RS03680 0.86 -1.4
777,475 - AMB_RS03680 0.86 -0.3
777,475 - AMB_RS03680 0.86 -2.0
777,475 - AMB_RS03680 0.86 -4.2
777,475 - AMB_RS03680 0.86 -1.2
777,475 - AMB_RS03680 0.86 +0.1
777,475 - AMB_RS03680 0.86 +0.1
777,475 - AMB_RS03680 0.86 +1.6
777,475 - AMB_RS03680 0.86 +0.5
777,498 + AMB_RS03680 0.88 +0.1
777,498 + AMB_RS03680 0.88 -2.1
777,498 + AMB_RS03680 0.88 +0.1
777,499 - AMB_RS03680 0.88 +0.6
777,499 - AMB_RS03680 0.88 -1.2
777,501 + AMB_RS03680 0.88 +0.6
777,502 - AMB_RS03680 0.88 +0.2
777,502 - AMB_RS03680 0.88 -3.4
777,546 + -0.5
777,546 + +0.8
777,546 + -0.1
777,546 + +0.0
777,546 + +1.0
777,546 + +0.0
777,546 + -0.9
777,546 + -2.0
777,546 + -0.6
777,547 - -0.7
777,547 - -0.7
777,547 - +0.6
777,547 - -1.2
777,547 - -1.6
777,549 + -1.2
777,549 + +0.6
777,550 - -0.4
777,653 - -2.1
778,012 + AMB_RS03685 0.32 -1.2
778,012 + AMB_RS03685 0.32 +0.4
778,012 + AMB_RS03685 0.32 +1.0
778,012 + AMB_RS03685 0.32 +0.6
778,013 - AMB_RS03685 0.32 +0.6
778,135 + AMB_RS03685 0.48 -1.0
778,136 - AMB_RS03685 0.48 +0.0
778,136 - AMB_RS03685 0.48 +1.7
778,136 - AMB_RS03685 0.48 +0.1
778,136 - AMB_RS03685 0.48 -0.8
778,144 - AMB_RS03685 0.49 +0.6
778,144 - AMB_RS03685 0.49 +0.0
778,144 - AMB_RS03685 0.49 +1.2
778,144 - AMB_RS03685 0.49 +0.9
778,297 - AMB_RS03685 0.69 +1.3
778,297 - AMB_RS03685 0.69 +0.9
778,360 + AMB_RS03685 0.77 +1.0
778,360 + AMB_RS03685 0.77 +0.6
778,360 + AMB_RS03685 0.77 -2.5
778,360 + AMB_RS03685 0.77 +0.3
778,361 - AMB_RS03685 0.77 +1.8
778,361 - AMB_RS03685 0.77 +0.5
778,361 - AMB_RS03685 0.77 +0.9
778,551 + -1.2
778,551 + -2.0
778,677 + AMB_RS03690 0.21 -0.2
778,677 + AMB_RS03690 0.21 -1.9
778,677 + AMB_RS03690 0.21 -2.3
778,677 + AMB_RS03690 0.21 +0.3
778,677 + AMB_RS03690 0.21 -1.9
778,678 - AMB_RS03690 0.21 +0.0
778,678 - AMB_RS03690 0.21 +0.1
778,678 - AMB_RS03690 0.21 +0.2
778,678 - AMB_RS03690 0.21 -0.2
778,678 - AMB_RS03690 0.21 -1.0
778,681 + AMB_RS03690 0.21 -1.2
778,682 - AMB_RS03690 0.21 -1.4
778,682 - AMB_RS03690 0.21 -0.7
778,903 - AMB_RS03690 0.50 -2.4
779,064 + AMB_RS03690 0.71 +0.6
779,064 + AMB_RS03690 0.71 -0.7
779,064 + AMB_RS03690 0.71 -2.2
779,065 - AMB_RS03690 0.71 +1.1
779,065 - AMB_RS03690 0.71 -2.4
779,065 - AMB_RS03690 0.71 -3.2
779,065 - AMB_RS03690 0.71 -0.7
779,105 - AMB_RS03690 0.77 -0.8
779,377 - -0.1

Or see this region's nucleotide sequence