Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03560

Experiment: 30_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03555 and AMB_RS03560 are separated by 127 nucleotidesAMB_RS03560 and AMB_RS03565 are separated by 51 nucleotides AMB_RS03555: AMB_RS03555 - tetratricopeptide repeat protein, at 746,070 to 747,443 _RS03555 AMB_RS03560: AMB_RS03560 - tRNA-His, at 747,571 to 747,647 _RS03560 AMB_RS03565: AMB_RS03565 - pyridoxal phosphate-dependent aminotransferase, at 747,699 to 748,859 _RS03565 Position (kb) 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 746.841 kb on + strand, within AMB_RS03555at 746.865 kb on + strand, within AMB_RS03555at 746.865 kb on + strand, within AMB_RS03555at 746.865 kb on + strand, within AMB_RS03555at 746.865 kb on + strand, within AMB_RS03555at 746.866 kb on - strand, within AMB_RS03555at 746.866 kb on - strand, within AMB_RS03555at 746.866 kb on - strand, within AMB_RS03555at 746.908 kb on - strand, within AMB_RS03555at 746.937 kb on + strand, within AMB_RS03555at 746.937 kb on + strand, within AMB_RS03555at 746.938 kb on - strand, within AMB_RS03555at 747.093 kb on + strand, within AMB_RS03555at 747.094 kb on - strand, within AMB_RS03555at 747.094 kb on - strand, within AMB_RS03555at 747.094 kb on - strand, within AMB_RS03555at 747.180 kb on + strand, within AMB_RS03555at 747.180 kb on + strand, within AMB_RS03555at 747.180 kb on + strand, within AMB_RS03555at 747.180 kb on + strand, within AMB_RS03555at 747.181 kb on - strand, within AMB_RS03555at 747.181 kb on - strand, within AMB_RS03555at 747.181 kb on - strand, within AMB_RS03555at 747.181 kb on - strand, within AMB_RS03555at 747.279 kb on + strand, within AMB_RS03555at 747.279 kb on + strand, within AMB_RS03555at 747.279 kb on + strand, within AMB_RS03555at 747.280 kb on - strand, within AMB_RS03555at 747.303 kb on + strand, within AMB_RS03555at 747.321 kb on + strandat 747.321 kb on + strandat 747.321 kb on + strandat 747.321 kb on + strandat 747.322 kb on - strandat 747.322 kb on - strandat 747.322 kb on - strandat 747.322 kb on - strandat 747.322 kb on - strandat 747.323 kb on + strandat 747.324 kb on - strandat 747.417 kb on + strandat 747.418 kb on - strandat 747.546 kb on - strandat 747.802 kb on + strandat 747.803 kb on - strandat 747.803 kb on - strandat 747.803 kb on - strandat 748.009 kb on + strand, within AMB_RS03565at 748.009 kb on + strand, within AMB_RS03565at 748.010 kb on - strand, within AMB_RS03565at 748.010 kb on - strand, within AMB_RS03565at 748.010 kb on - strand, within AMB_RS03565at 748.012 kb on + strand, within AMB_RS03565at 748.012 kb on + strand, within AMB_RS03565at 748.012 kb on + strand, within AMB_RS03565at 748.012 kb on + strand, within AMB_RS03565at 748.013 kb on - strand, within AMB_RS03565at 748.082 kb on - strand, within AMB_RS03565at 748.082 kb on - strand, within AMB_RS03565at 748.082 kb on - strand, within AMB_RS03565at 748.082 kb on - strand, within AMB_RS03565at 748.082 kb on - strand, within AMB_RS03565at 748.243 kb on + strand, within AMB_RS03565at 748.244 kb on - strand, within AMB_RS03565at 748.258 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.489 kb on + strand, within AMB_RS03565at 748.489 kb on + strand, within AMB_RS03565at 748.489 kb on + strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.621 kb on + strand, within AMB_RS03565at 748.622 kb on - strand, within AMB_RS03565at 748.622 kb on - strand, within AMB_RS03565

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_3
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746,841 + AMB_RS03555 0.56 -0.2
746,865 + AMB_RS03555 0.58 -1.6
746,865 + AMB_RS03555 0.58 -0.2
746,865 + AMB_RS03555 0.58 +0.1
746,865 + AMB_RS03555 0.58 -0.4
746,866 - AMB_RS03555 0.58 +0.6
746,866 - AMB_RS03555 0.58 +0.4
746,866 - AMB_RS03555 0.58 +0.2
746,908 - AMB_RS03555 0.61 -0.1
746,937 + AMB_RS03555 0.63 +1.2
746,937 + AMB_RS03555 0.63 +0.1
746,938 - AMB_RS03555 0.63 -2.1
747,093 + AMB_RS03555 0.74 +0.0
747,094 - AMB_RS03555 0.75 -2.2
747,094 - AMB_RS03555 0.75 -0.7
747,094 - AMB_RS03555 0.75 -1.2
747,180 + AMB_RS03555 0.81 -1.0
747,180 + AMB_RS03555 0.81 +0.8
747,180 + AMB_RS03555 0.81 -1.7
747,180 + AMB_RS03555 0.81 -0.3
747,181 - AMB_RS03555 0.81 -0.2
747,181 - AMB_RS03555 0.81 -1.6
747,181 - AMB_RS03555 0.81 +1.2
747,181 - AMB_RS03555 0.81 -1.2
747,279 + AMB_RS03555 0.88 -3.3
747,279 + AMB_RS03555 0.88 -1.0
747,279 + AMB_RS03555 0.88 +0.9
747,280 - AMB_RS03555 0.88 -1.9
747,303 + AMB_RS03555 0.90 -0.0
747,321 + +0.0
747,321 + -2.2
747,321 + +0.0
747,321 + +0.0
747,322 - -1.4
747,322 - +0.0
747,322 - +1.2
747,322 - +0.2
747,322 - -1.9
747,323 + +2.6
747,324 - -1.9
747,417 + -2.2
747,418 - -1.7
747,546 - -1.4
747,802 + -0.3
747,803 - +1.2
747,803 - +0.2
747,803 - -0.8
748,009 + AMB_RS03565 0.27 -0.3
748,009 + AMB_RS03565 0.27 -1.4
748,010 - AMB_RS03565 0.27 +0.0
748,010 - AMB_RS03565 0.27 -1.0
748,010 - AMB_RS03565 0.27 -0.4
748,012 + AMB_RS03565 0.27 -3.1
748,012 + AMB_RS03565 0.27 +0.7
748,012 + AMB_RS03565 0.27 -0.5
748,012 + AMB_RS03565 0.27 -0.8
748,013 - AMB_RS03565 0.27 -1.0
748,082 - AMB_RS03565 0.33 +1.6
748,082 - AMB_RS03565 0.33 +0.6
748,082 - AMB_RS03565 0.33 -0.7
748,082 - AMB_RS03565 0.33 +0.0
748,082 - AMB_RS03565 0.33 +0.0
748,243 + AMB_RS03565 0.47 +0.0
748,244 - AMB_RS03565 0.47 -1.2
748,258 + AMB_RS03565 0.48 -2.3
748,279 + AMB_RS03565 0.50 -1.8
748,279 + AMB_RS03565 0.50 -1.2
748,279 + AMB_RS03565 0.50 -0.7
748,279 + AMB_RS03565 0.50 +0.5
748,280 - AMB_RS03565 0.50 +0.6
748,280 - AMB_RS03565 0.50 -0.0
748,280 - AMB_RS03565 0.50 +0.2
748,280 - AMB_RS03565 0.50 +0.5
748,280 - AMB_RS03565 0.50 -0.6
748,489 + AMB_RS03565 0.68 +0.6
748,489 + AMB_RS03565 0.68 -1.0
748,489 + AMB_RS03565 0.68 -0.3
748,490 - AMB_RS03565 0.68 -0.6
748,490 - AMB_RS03565 0.68 -0.3
748,490 - AMB_RS03565 0.68 -0.3
748,490 - AMB_RS03565 0.68 -0.4
748,490 - AMB_RS03565 0.68 -0.7
748,490 - AMB_RS03565 0.68 +0.4
748,490 - AMB_RS03565 0.68 -1.2
748,490 - AMB_RS03565 0.68 +0.3
748,490 - AMB_RS03565 0.68 -0.1
748,621 + AMB_RS03565 0.79 +0.3
748,622 - AMB_RS03565 0.80 +0.6
748,622 - AMB_RS03565 0.80 -0.1

Or see this region's nucleotide sequence