Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03495 and AMB_RS03500 are separated by 48 nucleotides AMB_RS03500 and AMB_RS03505 are separated by 33 nucleotides
AMB_RS03495: AMB_RS03495 - alpha/beta hydrolase, at 730,738 to 731,874
_RS03495
AMB_RS03500: AMB_RS03500 - DNA-protecting protein DprA, at 731,923 to 733,050
_RS03500
AMB_RS03505: AMB_RS03505 - type I DNA topoisomerase, at 733,084 to 735,774
_RS03505
Position (kb) 731
732
733
734 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 731.124 kb on + strand, within AMB_RS03495 at 731.125 kb on - strand, within AMB_RS03495 at 731.155 kb on + strand, within AMB_RS03495 at 731.155 kb on + strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.368 kb on + strand, within AMB_RS03495 at 731.385 kb on + strand, within AMB_RS03495 at 731.386 kb on - strand, within AMB_RS03495 at 731.695 kb on + strand, within AMB_RS03495 at 731.695 kb on + strand, within AMB_RS03495 at 731.731 kb on + strand, within AMB_RS03495 at 731.732 kb on - strand, within AMB_RS03495 at 731.732 kb on - strand, within AMB_RS03495 at 731.873 kb on - strand at 732.191 kb on - strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.359 kb on - strand, within AMB_RS03500 at 732.359 kb on - strand, within AMB_RS03500 at 732.463 kb on + strand, within AMB_RS03500 at 732.463 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.861 kb on + strand, within AMB_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 731,124 + AMB_RS03495 0.34 +0.2 731,125 - AMB_RS03495 0.34 +0.2 731,155 + AMB_RS03495 0.37 -1.1 731,155 + AMB_RS03495 0.37 +0.5 731,156 - AMB_RS03495 0.37 -1.0 731,156 - AMB_RS03495 0.37 -1.1 731,156 - AMB_RS03495 0.37 -2.1 731,156 - AMB_RS03495 0.37 -1.2 731,368 + AMB_RS03495 0.55 -1.7 731,385 + AMB_RS03495 0.57 -0.5 731,386 - AMB_RS03495 0.57 +0.0 731,695 + AMB_RS03495 0.84 -4.9 731,695 + AMB_RS03495 0.84 +0.4 731,731 + AMB_RS03495 0.87 -1.4 731,732 - AMB_RS03495 0.87 -0.4 731,732 - AMB_RS03495 0.87 -0.3 731,873 - -1.7 732,191 - AMB_RS03500 0.24 +0.1 732,358 + AMB_RS03500 0.39 +0.0 732,358 + AMB_RS03500 0.39 +0.4 732,358 + AMB_RS03500 0.39 -1.2 732,359 - AMB_RS03500 0.39 -0.2 732,359 - AMB_RS03500 0.39 -3.3 732,463 + AMB_RS03500 0.48 -1.0 732,463 + AMB_RS03500 0.48 -2.2 732,556 + AMB_RS03500 0.56 -0.6 732,556 + AMB_RS03500 0.56 +0.9 732,556 + AMB_RS03500 0.56 -0.1 732,557 - AMB_RS03500 0.56 +0.4 732,557 - AMB_RS03500 0.56 +0.8 732,557 - AMB_RS03500 0.56 -0.4 732,557 - AMB_RS03500 0.56 -0.3 732,557 - AMB_RS03500 0.56 -0.4 732,861 + AMB_RS03500 0.83 -1.2
Or see this region's nucleotide sequence