Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03190 and AMB_RS03195 overlap by 17 nucleotides AMB_RS03195 and AMB_RS23895 are separated by 140 nucleotides
AMB_RS03190: AMB_RS03190 - flagellar biosynthesis protein FlhB, at 661,803 to 662,870
_RS03190
AMB_RS03195: AMB_RS03195 - PAS domain-containing sensor histidine kinase, at 662,854 to 665,244
_RS03195
AMB_RS23895: AMB_RS23895 - FRG domain-containing protein, at 665,385 to 666,089
_RS23895
Position (kb) 662
663
664
665
666 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 661.877 kb on + strand at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.953 kb on + strand, within AMB_RS03190 at 661.954 kb on - strand, within AMB_RS03190 at 661.954 kb on - strand, within AMB_RS03190 at 661.954 kb on - strand, within AMB_RS03190 at 662.300 kb on + strand, within AMB_RS03190 at 662.301 kb on - strand, within AMB_RS03190 at 662.301 kb on - strand, within AMB_RS03190 at 662.310 kb on + strand, within AMB_RS03190 at 662.310 kb on + strand, within AMB_RS03190 at 662.310 kb on + strand, within AMB_RS03190 at 662.352 kb on + strand, within AMB_RS03190 at 662.353 kb on - strand, within AMB_RS03190 at 662.353 kb on - strand, within AMB_RS03190 at 662.430 kb on + strand, within AMB_RS03190 at 662.430 kb on + strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.431 kb on - strand, within AMB_RS03190 at 662.616 kb on + strand, within AMB_RS03190 at 662.617 kb on - strand, within AMB_RS03190 at 662.634 kb on + strand, within AMB_RS03190 at 662.635 kb on - strand, within AMB_RS03190 at 662.808 kb on + strand at 662.809 kb on - strand at 662.835 kb on + strand at 662.836 kb on - strand at 662.836 kb on - strand at 662.836 kb on - strand at 662.868 kb on + strand at 662.869 kb on - strand at 663.443 kb on - strand, within AMB_RS03195 at 663.443 kb on - strand, within AMB_RS03195 at 663.472 kb on + strand, within AMB_RS03195 at 664.591 kb on + strand, within AMB_RS03195 at 664.591 kb on + strand, within AMB_RS03195 at 664.591 kb on + strand, within AMB_RS03195 at 664.592 kb on - strand, within AMB_RS03195 at 664.592 kb on - strand, within AMB_RS03195 at 664.718 kb on - strand, within AMB_RS03195 at 664.792 kb on + strand, within AMB_RS03195 at 664.792 kb on + strand, within AMB_RS03195 at 664.792 kb on + strand, within AMB_RS03195 at 664.793 kb on - strand, within AMB_RS03195 at 664.793 kb on - strand, within AMB_RS03195 at 664.793 kb on - strand, within AMB_RS03195 at 664.793 kb on - strand, within AMB_RS03195 at 664.872 kb on + strand, within AMB_RS03195 at 664.954 kb on + strand, within AMB_RS03195 at 664.955 kb on - strand, within AMB_RS03195 at 664.955 kb on - strand, within AMB_RS03195 at 664.955 kb on - strand, within AMB_RS03195 at 664.956 kb on + strand, within AMB_RS03195 at 664.956 kb on + strand, within AMB_RS03195 at 664.957 kb on - strand, within AMB_RS03195 at 665.125 kb on + strand at 665.242 kb on + strand at 665.243 kb on - strand at 665.322 kb on + strand at 665.355 kb on - strand at 665.386 kb on + strand at 665.397 kb on - strand at 665.405 kb on + strand at 665.406 kb on - strand at 665.529 kb on - strand, within AMB_RS23895 at 665.745 kb on + strand, within AMB_RS23895 at 665.752 kb on + strand, within AMB_RS23895 at 665.752 kb on + strand, within AMB_RS23895 at 665.753 kb on - strand, within AMB_RS23895 at 665.753 kb on - strand, within AMB_RS23895 at 665.960 kb on + strand, within AMB_RS23895 at 666.062 kb on - strand at 666.086 kb on - strand at 666.128 kb on - strand at 666.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 661,877 + -0.2 661,953 + AMB_RS03190 0.14 -3.1 661,953 + AMB_RS03190 0.14 -1.2 661,953 + AMB_RS03190 0.14 +1.1 661,953 + AMB_RS03190 0.14 -0.4 661,953 + AMB_RS03190 0.14 -0.8 661,953 + AMB_RS03190 0.14 -2.0 661,954 - AMB_RS03190 0.14 +1.6 661,954 - AMB_RS03190 0.14 -2.2 661,954 - AMB_RS03190 0.14 -1.8 662,300 + AMB_RS03190 0.47 +0.0 662,301 - AMB_RS03190 0.47 -0.7 662,301 - AMB_RS03190 0.47 -0.7 662,310 + AMB_RS03190 0.47 -0.5 662,310 + AMB_RS03190 0.47 -0.7 662,310 + AMB_RS03190 0.47 -3.0 662,352 + AMB_RS03190 0.51 +0.0 662,353 - AMB_RS03190 0.51 -1.6 662,353 - AMB_RS03190 0.51 +0.3 662,430 + AMB_RS03190 0.59 +2.8 662,430 + AMB_RS03190 0.59 +0.6 662,431 - AMB_RS03190 0.59 -1.4 662,431 - AMB_RS03190 0.59 +0.8 662,431 - AMB_RS03190 0.59 -0.8 662,431 - AMB_RS03190 0.59 -3.1 662,616 + AMB_RS03190 0.76 -1.8 662,617 - AMB_RS03190 0.76 -0.1 662,634 + AMB_RS03190 0.78 +0.5 662,635 - AMB_RS03190 0.78 +0.7 662,808 + -1.0 662,809 - -1.0 662,835 + +0.3 662,836 - -0.9 662,836 - -1.0 662,836 - -3.0 662,868 + +0.1 662,869 - +1.6 663,443 - AMB_RS03195 0.25 +0.4 663,443 - AMB_RS03195 0.25 -0.4 663,472 + AMB_RS03195 0.26 -1.2 664,591 + AMB_RS03195 0.73 -0.5 664,591 + AMB_RS03195 0.73 +0.0 664,591 + AMB_RS03195 0.73 +0.3 664,592 - AMB_RS03195 0.73 +0.1 664,592 - AMB_RS03195 0.73 -0.2 664,718 - AMB_RS03195 0.78 -0.9 664,792 + AMB_RS03195 0.81 -1.0 664,792 + AMB_RS03195 0.81 +0.0 664,792 + AMB_RS03195 0.81 -1.7 664,793 - AMB_RS03195 0.81 -1.1 664,793 - AMB_RS03195 0.81 -0.6 664,793 - AMB_RS03195 0.81 -1.7 664,793 - AMB_RS03195 0.81 -0.5 664,872 + AMB_RS03195 0.84 -0.4 664,954 + AMB_RS03195 0.88 +1.2 664,955 - AMB_RS03195 0.88 +0.6 664,955 - AMB_RS03195 0.88 -1.4 664,955 - AMB_RS03195 0.88 -0.7 664,956 + AMB_RS03195 0.88 -1.2 664,956 + AMB_RS03195 0.88 +0.6 664,957 - AMB_RS03195 0.88 -2.1 665,125 + -3.8 665,242 + -0.2 665,243 - -0.0 665,322 + +0.3 665,355 - -2.3 665,386 + -1.0 665,397 - +0.5 665,405 + -0.0 665,406 - -1.8 665,529 - AMB_RS23895 0.20 -1.2 665,745 + AMB_RS23895 0.51 -0.5 665,752 + AMB_RS23895 0.52 +0.0 665,752 + AMB_RS23895 0.52 -0.7 665,753 - AMB_RS23895 0.52 +0.0 665,753 - AMB_RS23895 0.52 -3.7 665,960 + AMB_RS23895 0.82 -1.0 666,062 - -0.1 666,086 - -0.4 666,128 - +0.0 666,227 - +0.0
Or see this region's nucleotide sequence