Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03010 and AMB_RS03015 are separated by 193 nucleotides AMB_RS03015 and AMB_RS03020 are separated by 137 nucleotides AMB_RS03020 and AMB_RS03025 are separated by 436 nucleotides AMB_RS03025 and AMB_RS03030 overlap by 23 nucleotides
AMB_RS03010: AMB_RS03010 - hypothetical protein, at 630,126 to 630,908
_RS03010
AMB_RS03015: AMB_RS03015 - hypothetical protein, at 631,102 to 631,749
_RS03015
AMB_RS03020: AMB_RS03020 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 631,887 to 632,738
_RS03020
AMB_RS03025: AMB_RS03025 - PAS domain-containing protein, at 633,175 to 633,699
_RS03025
AMB_RS03030: AMB_RS03030 - sensory rhodopsin II transducer, at 633,677 to 634,987
_RS03030
Position (kb) 631
632
633 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 630.906 kb on + strand at 630.907 kb on - strand at 631.104 kb on - strand at 631.317 kb on + strand, within AMB_RS03015 at 631.318 kb on - strand, within AMB_RS03015 at 631.318 kb on - strand, within AMB_RS03015 at 631.318 kb on - strand, within AMB_RS03015 at 631.482 kb on - strand, within AMB_RS03015 at 631.482 kb on - strand, within AMB_RS03015 at 631.797 kb on - strand at 631.797 kb on - strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.798 kb on + strand at 631.799 kb on - strand at 631.799 kb on - strand at 631.799 kb on - strand at 631.799 kb on - strand at 631.799 kb on - strand at 631.881 kb on - strand at 632.167 kb on + strand, within AMB_RS03020 at 632.167 kb on + strand, within AMB_RS03020 at 632.167 kb on + strand, within AMB_RS03020 at 632.168 kb on - strand, within AMB_RS03020 at 632.168 kb on - strand, within AMB_RS03020 at 632.168 kb on - strand, within AMB_RS03020 at 632.168 kb on - strand, within AMB_RS03020 at 632.168 kb on - strand, within AMB_RS03020 at 632.168 kb on - strand, within AMB_RS03020 at 632.307 kb on - strand, within AMB_RS03020 at 632.308 kb on + strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.309 kb on - strand, within AMB_RS03020 at 632.500 kb on + strand, within AMB_RS03020 at 632.500 kb on + strand, within AMB_RS03020 at 632.500 kb on + strand, within AMB_RS03020 at 632.500 kb on + strand, within AMB_RS03020 at 632.500 kb on + strand, within AMB_RS03020 at 632.501 kb on - strand, within AMB_RS03020 at 632.501 kb on - strand, within AMB_RS03020 at 632.501 kb on - strand, within AMB_RS03020 at 632.501 kb on - strand, within AMB_RS03020 at 632.560 kb on + strand, within AMB_RS03020 at 632.561 kb on - strand, within AMB_RS03020 at 632.561 kb on - strand, within AMB_RS03020 at 632.599 kb on + strand, within AMB_RS03020 at 632.600 kb on - strand, within AMB_RS03020 at 632.600 kb on - strand, within AMB_RS03020 at 632.600 kb on - strand, within AMB_RS03020 at 632.719 kb on + strand at 632.719 kb on + strand at 632.720 kb on - strand at 632.720 kb on - strand at 632.731 kb on + strand at 632.779 kb on + strand at 632.779 kb on + strand at 632.780 kb on - strand at 632.780 kb on - strand at 632.823 kb on - strand at 632.825 kb on - strand at 632.871 kb on + strand at 632.875 kb on + strand at 632.876 kb on - strand at 632.899 kb on + strand at 632.944 kb on - strand at 632.944 kb on - strand at 632.949 kb on + strand at 632.950 kb on - strand at 632.950 kb on - strand at 632.950 kb on - strand at 632.950 kb on - strand at 632.950 kb on - strand at 632.950 kb on - strand at 633.028 kb on + strand at 633.029 kb on - strand at 633.064 kb on - strand at 633.088 kb on + strand at 633.140 kb on - strand at 633.193 kb on + strand at 633.194 kb on - strand at 633.194 kb on - strand at 633.214 kb on - strand at 633.271 kb on + strand, within AMB_RS03025 at 633.272 kb on - strand, within AMB_RS03025 at 633.272 kb on - strand, within AMB_RS03025 at 633.272 kb on - strand, within AMB_RS03025 at 633.421 kb on + strand, within AMB_RS03025 at 633.421 kb on + strand, within AMB_RS03025 at 633.422 kb on - strand, within AMB_RS03025 at 633.422 kb on - strand, within AMB_RS03025 at 633.422 kb on - strand, within AMB_RS03025 at 633.422 kb on - strand, within AMB_RS03025 at 633.425 kb on + strand, within AMB_RS03025 at 633.425 kb on + strand, within AMB_RS03025 at 633.425 kb on + strand, within AMB_RS03025 at 633.426 kb on - strand, within AMB_RS03025 at 633.426 kb on - strand, within AMB_RS03025 at 633.426 kb on - strand, within AMB_RS03025 at 633.426 kb on - strand, within AMB_RS03025 at 633.426 kb on - strand, within AMB_RS03025 at 633.426 kb on - strand, within AMB_RS03025 at 633.454 kb on + strand, within AMB_RS03025 at 633.455 kb on - strand, within AMB_RS03025 at 633.455 kb on - strand, within AMB_RS03025 at 633.501 kb on + strand, within AMB_RS03025 at 633.501 kb on + strand, within AMB_RS03025 at 633.511 kb on + strand, within AMB_RS03025 at 633.511 kb on + strand, within AMB_RS03025 at 633.511 kb on + strand, within AMB_RS03025 at 633.511 kb on + strand, within AMB_RS03025 at 633.512 kb on - strand, within AMB_RS03025 at 633.512 kb on - strand, within AMB_RS03025 at 633.569 kb on - strand, within AMB_RS03025
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 630,906 + -1.0 630,907 - -0.7 631,104 - +0.9 631,317 + AMB_RS03015 0.33 +1.4 631,318 - AMB_RS03015 0.33 -3.1 631,318 - AMB_RS03015 0.33 -0.4 631,318 - AMB_RS03015 0.33 +0.1 631,482 - AMB_RS03015 0.59 -1.1 631,482 - AMB_RS03015 0.59 +1.6 631,797 - -0.4 631,797 - -2.1 631,798 + -0.7 631,798 + +0.6 631,798 + -1.1 631,798 + +4.3 631,798 + -3.9 631,798 + -1.6 631,798 + +0.6 631,798 + -0.3 631,799 - +0.4 631,799 - +0.0 631,799 - -0.2 631,799 - -1.4 631,799 - -0.7 631,881 - -1.2 632,167 + AMB_RS03020 0.33 -1.0 632,167 + AMB_RS03020 0.33 -0.2 632,167 + AMB_RS03020 0.33 -0.2 632,168 - AMB_RS03020 0.33 -2.0 632,168 - AMB_RS03020 0.33 -0.4 632,168 - AMB_RS03020 0.33 -0.4 632,168 - AMB_RS03020 0.33 -0.7 632,168 - AMB_RS03020 0.33 -0.2 632,168 - AMB_RS03020 0.33 -4.0 632,307 - AMB_RS03020 0.49 -0.7 632,308 + AMB_RS03020 0.49 -1.2 632,309 - AMB_RS03020 0.50 -0.5 632,309 - AMB_RS03020 0.50 -1.7 632,309 - AMB_RS03020 0.50 -0.4 632,309 - AMB_RS03020 0.50 -1.3 632,309 - AMB_RS03020 0.50 +4.1 632,309 - AMB_RS03020 0.50 +0.6 632,309 - AMB_RS03020 0.50 -1.7 632,500 + AMB_RS03020 0.72 -0.4 632,500 + AMB_RS03020 0.72 +0.7 632,500 + AMB_RS03020 0.72 -1.8 632,500 + AMB_RS03020 0.72 +1.6 632,500 + AMB_RS03020 0.72 -1.8 632,501 - AMB_RS03020 0.72 -0.4 632,501 - AMB_RS03020 0.72 -0.2 632,501 - AMB_RS03020 0.72 -1.0 632,501 - AMB_RS03020 0.72 +2.0 632,560 + AMB_RS03020 0.79 -2.6 632,561 - AMB_RS03020 0.79 -0.4 632,561 - AMB_RS03020 0.79 -0.4 632,599 + AMB_RS03020 0.84 +1.6 632,600 - AMB_RS03020 0.84 +0.6 632,600 - AMB_RS03020 0.84 -0.9 632,600 - AMB_RS03020 0.84 +0.1 632,719 + -0.4 632,719 + -2.0 632,720 - +0.1 632,720 - +0.2 632,731 + -3.1 632,779 + -0.2 632,779 + -2.0 632,780 - -1.5 632,780 - -1.2 632,823 - -0.6 632,825 - -2.5 632,871 + -2.0 632,875 + +0.6 632,876 - -0.1 632,899 + -0.3 632,944 - +0.7 632,944 - -0.4 632,949 + -2.5 632,950 - -0.9 632,950 - -0.1 632,950 - -0.2 632,950 - -1.2 632,950 - +0.6 632,950 - -0.1 633,028 + +0.0 633,029 - -0.0 633,064 - -0.5 633,088 + -0.4 633,140 - -1.1 633,193 + -1.3 633,194 - -1.0 633,194 - -0.7 633,214 - +0.9 633,271 + AMB_RS03025 0.18 -0.1 633,272 - AMB_RS03025 0.18 +0.8 633,272 - AMB_RS03025 0.18 -1.6 633,272 - AMB_RS03025 0.18 +0.5 633,421 + AMB_RS03025 0.47 +0.4 633,421 + AMB_RS03025 0.47 -1.6 633,422 - AMB_RS03025 0.47 -1.8 633,422 - AMB_RS03025 0.47 -1.8 633,422 - AMB_RS03025 0.47 +0.2 633,422 - AMB_RS03025 0.47 +1.0 633,425 + AMB_RS03025 0.48 -0.4 633,425 + AMB_RS03025 0.48 -0.3 633,425 + AMB_RS03025 0.48 -0.1 633,426 - AMB_RS03025 0.48 +0.0 633,426 - AMB_RS03025 0.48 -0.7 633,426 - AMB_RS03025 0.48 +0.0 633,426 - AMB_RS03025 0.48 +0.2 633,426 - AMB_RS03025 0.48 +0.4 633,426 - AMB_RS03025 0.48 -3.6 633,454 + AMB_RS03025 0.53 -0.2 633,455 - AMB_RS03025 0.53 -1.4 633,455 - AMB_RS03025 0.53 +0.2 633,501 + AMB_RS03025 0.62 -0.1 633,501 + AMB_RS03025 0.62 -1.8 633,511 + AMB_RS03025 0.64 -2.0 633,511 + AMB_RS03025 0.64 -3.5 633,511 + AMB_RS03025 0.64 -1.8 633,511 + AMB_RS03025 0.64 -1.8 633,512 - AMB_RS03025 0.64 -2.0 633,512 - AMB_RS03025 0.64 -0.4 633,569 - AMB_RS03025 0.75 -2.4
Or see this region's nucleotide sequence