Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03000 and AMB_RS03005 are separated by 61 nucleotides AMB_RS03005 and AMB_RS03010 are separated by 5 nucleotides AMB_RS03010 and AMB_RS03015 are separated by 193 nucleotides
AMB_RS03000: AMB_RS03000 - acetoacetate--CoA ligase, at 627,330 to 629,288
_RS03000
AMB_RS03005: AMB_RS03005 - carbonate dehydratase, at 629,350 to 630,120
_RS03005
AMB_RS03010: AMB_RS03010 - hypothetical protein, at 630,126 to 630,908
_RS03010
AMB_RS03015: AMB_RS03015 - hypothetical protein, at 631,102 to 631,749
_RS03015
Position (kb) 629
630
631 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 628.372 kb on + strand, within AMB_RS03000 at 628.372 kb on + strand, within AMB_RS03000 at 628.373 kb on - strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.542 kb on + strand, within AMB_RS03000 at 628.543 kb on - strand, within AMB_RS03000 at 628.638 kb on + strand, within AMB_RS03000 at 628.639 kb on - strand, within AMB_RS03000 at 628.736 kb on + strand, within AMB_RS03000 at 628.736 kb on + strand, within AMB_RS03000 at 628.736 kb on + strand, within AMB_RS03000 at 628.794 kb on + strand, within AMB_RS03000 at 628.795 kb on - strand, within AMB_RS03000 at 628.795 kb on - strand, within AMB_RS03000 at 628.806 kb on + strand, within AMB_RS03000 at 628.806 kb on + strand, within AMB_RS03000 at 628.856 kb on + strand, within AMB_RS03000 at 628.944 kb on + strand, within AMB_RS03000 at 628.945 kb on - strand, within AMB_RS03000 at 628.945 kb on - strand, within AMB_RS03000 at 628.945 kb on - strand, within AMB_RS03000 at 629.419 kb on - strand at 629.506 kb on + strand, within AMB_RS03005 at 629.686 kb on + strand, within AMB_RS03005 at 629.687 kb on - strand, within AMB_RS03005 at 630.001 kb on + strand, within AMB_RS03005 at 630.001 kb on + strand, within AMB_RS03005 at 630.001 kb on + strand, within AMB_RS03005 at 630.002 kb on - strand, within AMB_RS03005 at 630.227 kb on + strand, within AMB_RS03010 at 630.227 kb on + strand, within AMB_RS03010 at 630.227 kb on + strand, within AMB_RS03010 at 630.228 kb on - strand, within AMB_RS03010 at 630.678 kb on + strand, within AMB_RS03010 at 630.678 kb on + strand, within AMB_RS03010 at 630.690 kb on + strand, within AMB_RS03010 at 630.691 kb on - strand, within AMB_RS03010 at 630.906 kb on + strand at 630.907 kb on - strand at 631.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 628,372 + AMB_RS03000 0.53 -1.9 628,372 + AMB_RS03000 0.53 +0.1 628,373 - AMB_RS03000 0.53 -2.0 628,536 + AMB_RS03000 0.62 +0.0 628,536 + AMB_RS03000 0.62 +0.1 628,536 + AMB_RS03000 0.62 +0.4 628,536 + AMB_RS03000 0.62 -4.1 628,537 - AMB_RS03000 0.62 +0.3 628,537 - AMB_RS03000 0.62 +0.0 628,537 - AMB_RS03000 0.62 -2.3 628,537 - AMB_RS03000 0.62 +0.1 628,537 - AMB_RS03000 0.62 -2.0 628,537 - AMB_RS03000 0.62 +0.4 628,542 + AMB_RS03000 0.62 -0.7 628,543 - AMB_RS03000 0.62 -1.6 628,638 + AMB_RS03000 0.67 -1.6 628,639 - AMB_RS03000 0.67 +0.5 628,736 + AMB_RS03000 0.72 -0.5 628,736 + AMB_RS03000 0.72 +0.1 628,736 + AMB_RS03000 0.72 -0.2 628,794 + AMB_RS03000 0.75 -1.7 628,795 - AMB_RS03000 0.75 +3.9 628,795 - AMB_RS03000 0.75 -1.8 628,806 + AMB_RS03000 0.75 -0.3 628,806 + AMB_RS03000 0.75 -0.2 628,856 + AMB_RS03000 0.78 -0.7 628,944 + AMB_RS03000 0.82 -0.6 628,945 - AMB_RS03000 0.82 +0.1 628,945 - AMB_RS03000 0.82 -0.3 628,945 - AMB_RS03000 0.82 -1.0 629,419 - -3.2 629,506 + AMB_RS03005 0.20 -2.4 629,686 + AMB_RS03005 0.44 -0.7 629,687 - AMB_RS03005 0.44 -1.0 630,001 + AMB_RS03005 0.84 -0.4 630,001 + AMB_RS03005 0.84 +0.0 630,001 + AMB_RS03005 0.84 -1.9 630,002 - AMB_RS03005 0.85 +0.0 630,227 + AMB_RS03010 0.13 -1.0 630,227 + AMB_RS03010 0.13 +1.2 630,227 + AMB_RS03010 0.13 -1.3 630,228 - AMB_RS03010 0.13 +0.0 630,678 + AMB_RS03010 0.70 -1.4 630,678 + AMB_RS03010 0.70 -1.2 630,690 + AMB_RS03010 0.72 -0.7 630,691 - AMB_RS03010 0.72 -0.7 630,906 + -1.0 630,907 - -0.7 631,104 - +0.9
Or see this region's nucleotide sequence