Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02405 and AMB_RS02410 are separated by 7 nucleotides AMB_RS02410 and AMB_RS02415 overlap by 8 nucleotides AMB_RS02415 and AMB_RS02420 are separated by 27 nucleotides AMB_RS02420 and AMB_RS02425 overlap by 4 nucleotides AMB_RS02425 and AMB_RS02430 are separated by 3 nucleotides AMB_RS02430 and AMB_RS02435 overlap by 4 nucleotides
AMB_RS02405: AMB_RS02405 - hypothetical protein, at 502,504 to 502,902
_RS02405
AMB_RS02410: AMB_RS02410 - hypothetical protein, at 502,910 to 503,128
_RS02410
AMB_RS02415: AMB_RS02415 - DnaK suppressor protein, at 503,121 to 503,345
_RS02415
AMB_RS02420: AMB_RS02420 - hypothetical protein, at 503,373 to 503,768
_RS02420
AMB_RS02425: AMB_RS02425 - hypothetical protein, at 503,765 to 504,091
_RS02425
AMB_RS02430: AMB_RS02430 - DUF3486 domain-containing protein, at 504,095 to 504,712
_RS02430
AMB_RS02435: AMB_RS02435 - hypothetical protein, at 504,709 to 505,185
_RS02435
Position (kb) 503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 502.888 kb on + strand at 502.889 kb on - strand at 502.889 kb on - strand at 502.889 kb on - strand at 503.224 kb on - strand, within AMB_RS02415 at 503.224 kb on - strand, within AMB_RS02415 at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.782 kb on + strand at 503.850 kb on - strand, within AMB_RS02425 at 503.850 kb on - strand, within AMB_RS02425 at 503.850 kb on - strand, within AMB_RS02425 at 503.850 kb on - strand, within AMB_RS02425 at 503.929 kb on + strand, within AMB_RS02425 at 503.929 kb on + strand, within AMB_RS02425 at 503.929 kb on + strand, within AMB_RS02425 at 503.930 kb on - strand, within AMB_RS02425 at 503.930 kb on - strand, within AMB_RS02425 at 503.930 kb on - strand, within AMB_RS02425 at 503.930 kb on - strand, within AMB_RS02425 at 503.930 kb on - strand, within AMB_RS02425 at 504.089 kb on + strand at 504.173 kb on + strand, within AMB_RS02430 at 504.174 kb on - strand, within AMB_RS02430 at 504.174 kb on - strand, within AMB_RS02430 at 504.174 kb on - strand, within AMB_RS02430 at 504.174 kb on - strand, within AMB_RS02430 at 504.174 kb on - strand, within AMB_RS02430 at 504.433 kb on + strand, within AMB_RS02430 at 504.692 kb on + strand at 504.692 kb on + strand at 504.949 kb on + strand, within AMB_RS02435 at 504.949 kb on + strand, within AMB_RS02435 at 504.950 kb on - strand, within AMB_RS02435 at 504.950 kb on - strand, within AMB_RS02435 at 504.980 kb on - strand, within AMB_RS02435 at 504.980 kb on - strand, within AMB_RS02435 at 504.980 kb on - strand, within AMB_RS02435 at 504.980 kb on - strand, within AMB_RS02435 at 504.980 kb on - strand, within AMB_RS02435 at 504.980 kb on - strand, within AMB_RS02435 at 505.015 kb on + strand, within AMB_RS02435 at 505.016 kb on - strand, within AMB_RS02435 at 505.016 kb on - strand, within AMB_RS02435 at 505.016 kb on - strand, within AMB_RS02435 at 505.016 kb on - strand, within AMB_RS02435 at 505.016 kb on - strand, within AMB_RS02435 at 505.084 kb on + strand, within AMB_RS02435 at 505.084 kb on + strand, within AMB_RS02435 at 505.085 kb on - strand, within AMB_RS02435 at 505.085 kb on - strand, within AMB_RS02435 at 505.087 kb on + strand, within AMB_RS02435 at 505.087 kb on + strand, within AMB_RS02435 at 505.087 kb on + strand, within AMB_RS02435 at 505.088 kb on - strand, within AMB_RS02435 at 505.088 kb on - strand, within AMB_RS02435 at 505.088 kb on - strand, within AMB_RS02435
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 502,888 + -0.4 502,889 - +0.8 502,889 - -1.2 502,889 - +0.8 503,224 - AMB_RS02415 0.46 -0.7 503,224 - AMB_RS02415 0.46 -0.1 503,370 + -1.4 503,370 + -0.8 503,370 + -2.6 503,370 + -0.8 503,370 + +0.0 503,370 + -2.0 503,370 + -0.7 503,370 + +1.6 503,371 - +0.7 503,371 - +0.8 503,371 - -1.8 503,371 - -0.4 503,371 - -0.4 503,782 + -1.0 503,850 - AMB_RS02425 0.26 -0.3 503,850 - AMB_RS02425 0.26 -1.5 503,850 - AMB_RS02425 0.26 -0.3 503,850 - AMB_RS02425 0.26 +1.6 503,929 + AMB_RS02425 0.50 +0.8 503,929 + AMB_RS02425 0.50 +0.8 503,929 + AMB_RS02425 0.50 +0.5 503,930 - AMB_RS02425 0.50 -1.6 503,930 - AMB_RS02425 0.50 -0.2 503,930 - AMB_RS02425 0.50 -1.4 503,930 - AMB_RS02425 0.50 -0.3 503,930 - AMB_RS02425 0.50 -0.2 504,089 + +0.0 504,173 + AMB_RS02430 0.13 -0.2 504,174 - AMB_RS02430 0.13 -0.7 504,174 - AMB_RS02430 0.13 -2.0 504,174 - AMB_RS02430 0.13 +0.2 504,174 - AMB_RS02430 0.13 -1.2 504,174 - AMB_RS02430 0.13 +0.3 504,433 + AMB_RS02430 0.55 +0.5 504,692 + -2.0 504,692 + -0.7 504,949 + AMB_RS02435 0.50 +0.6 504,949 + AMB_RS02435 0.50 +0.2 504,950 - AMB_RS02435 0.51 -0.6 504,950 - AMB_RS02435 0.51 +1.5 504,980 - AMB_RS02435 0.57 +0.0 504,980 - AMB_RS02435 0.57 +1.1 504,980 - AMB_RS02435 0.57 -1.2 504,980 - AMB_RS02435 0.57 -0.7 504,980 - AMB_RS02435 0.57 +0.5 504,980 - AMB_RS02435 0.57 -1.2 505,015 + AMB_RS02435 0.64 -1.0 505,016 - AMB_RS02435 0.64 -0.1 505,016 - AMB_RS02435 0.64 -1.2 505,016 - AMB_RS02435 0.64 -3.7 505,016 - AMB_RS02435 0.64 -2.3 505,016 - AMB_RS02435 0.64 -3.9 505,084 + AMB_RS02435 0.79 -2.0 505,084 + AMB_RS02435 0.79 -1.2 505,085 - AMB_RS02435 0.79 +0.4 505,085 - AMB_RS02435 0.79 +0.0 505,087 + AMB_RS02435 0.79 +0.6 505,087 + AMB_RS02435 0.79 +1.4 505,087 + AMB_RS02435 0.79 +1.5 505,088 - AMB_RS02435 0.79 +0.3 505,088 - AMB_RS02435 0.79 -0.4 505,088 - AMB_RS02435 0.79 +1.6
Or see this region's nucleotide sequence