Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02310 and AMB_RS02315 overlap by 1 nucleotides AMB_RS02315 and AMB_RS02320 overlap by 11 nucleotides AMB_RS02320 and AMB_RS23875 are separated by 107 nucleotides
AMB_RS02310: AMB_RS02310 - ATP-binding protein, at 491,938 to 492,681
_RS02310
AMB_RS02315: AMB_RS02315 - hypothetical protein, at 492,681 to 493,325
_RS02315
AMB_RS02320: AMB_RS02320 - hypothetical protein, at 493,315 to 493,716
_RS02320
AMB_RS23875: AMB_RS23875 - hypothetical protein, at 493,824 to 494,807
_RS23875
Position (kb) 493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.709 kb on + strand at 492.710 kb on - strand at 492.837 kb on + strand, within AMB_RS02315 at 492.838 kb on - strand, within AMB_RS02315 at 492.864 kb on + strand, within AMB_RS02315 at 492.865 kb on - strand, within AMB_RS02315 at 492.915 kb on + strand, within AMB_RS02315 at 492.915 kb on + strand, within AMB_RS02315 at 492.916 kb on - strand, within AMB_RS02315 at 492.916 kb on - strand, within AMB_RS02315 at 493.107 kb on + strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.135 kb on - strand, within AMB_RS02315 at 493.484 kb on - strand, within AMB_RS02320 at 493.484 kb on - strand, within AMB_RS02320 at 493.484 kb on - strand, within AMB_RS02320 at 493.502 kb on - strand, within AMB_RS02320 at 493.502 kb on - strand, within AMB_RS02320 at 493.658 kb on - strand, within AMB_RS02320 at 493.658 kb on - strand, within AMB_RS02320 at 493.751 kb on + strand at 493.751 kb on + strand at 493.752 kb on - strand at 493.752 kb on - strand at 493.752 kb on - strand at 493.752 kb on - strand at 493.824 kb on - strand at 493.824 kb on - strand at 493.824 kb on - strand at 493.824 kb on - strand at 494.590 kb on + strand, within AMB_RS23875
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 492,325 + AMB_RS02310 0.52 -0.4 492,325 + AMB_RS02310 0.52 -1.2 492,325 + AMB_RS02310 0.52 -1.0 492,325 + AMB_RS02310 0.52 -2.8 492,325 + AMB_RS02310 0.52 -2.2 492,325 + AMB_RS02310 0.52 -0.9 492,326 - AMB_RS02310 0.52 -0.9 492,326 - AMB_RS02310 0.52 -2.4 492,326 - AMB_RS02310 0.52 -2.0 492,326 - AMB_RS02310 0.52 -1.0 492,326 - AMB_RS02310 0.52 -2.1 492,326 - AMB_RS02310 0.52 -0.2 492,326 - AMB_RS02310 0.52 +0.6 492,326 - AMB_RS02310 0.52 -0.9 492,709 + +1.2 492,710 - -0.6 492,837 + AMB_RS02315 0.24 -3.0 492,838 - AMB_RS02315 0.24 +0.2 492,864 + AMB_RS02315 0.28 -0.0 492,865 - AMB_RS02315 0.29 -0.4 492,915 + AMB_RS02315 0.36 -4.0 492,915 + AMB_RS02315 0.36 -0.4 492,916 - AMB_RS02315 0.36 +0.2 492,916 - AMB_RS02315 0.36 -0.3 493,107 + AMB_RS02315 0.66 -0.7 493,108 - AMB_RS02315 0.66 -2.4 493,108 - AMB_RS02315 0.66 -1.7 493,108 - AMB_RS02315 0.66 -0.4 493,108 - AMB_RS02315 0.66 -0.4 493,108 - AMB_RS02315 0.66 -1.4 493,135 - AMB_RS02315 0.70 -0.2 493,484 - AMB_RS02320 0.42 +0.9 493,484 - AMB_RS02320 0.42 -0.7 493,484 - AMB_RS02320 0.42 +1.8 493,502 - AMB_RS02320 0.47 -0.6 493,502 - AMB_RS02320 0.47 -0.2 493,658 - AMB_RS02320 0.85 +0.4 493,658 - AMB_RS02320 0.85 -0.1 493,751 + -3.4 493,751 + -3.5 493,752 - -0.4 493,752 - -1.2 493,752 - -0.7 493,752 - +0.6 493,824 - +0.0 493,824 - +0.2 493,824 - +0.0 493,824 - -2.0 494,590 + AMB_RS23875 0.78 -1.4
Or see this region's nucleotide sequence