Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02250 and AMB_RS02255 are separated by 201 nucleotides AMB_RS02255 and AMB_RS02260 are separated by 92 nucleotides AMB_RS02260 and AMB_RS23115 are separated by 9 nucleotides
AMB_RS02250: AMB_RS02250 - hypothetical protein, at 476,419 to 480,750
_RS02250
AMB_RS02255: AMB_RS02255 - hypothetical protein, at 480,952 to 481,497
_RS02255
AMB_RS02260: AMB_RS02260 - hypothetical protein, at 481,590 to 482,405
_RS02260
AMB_RS23115: AMB_RS23115 - HAMP domain-containing protein, at 482,415 to 484,079
_RS23115
Position (kb) 480
481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.067 kb on + strand, within AMB_RS02250 at 480.307 kb on + strand, within AMB_RS02250 at 480.307 kb on + strand, within AMB_RS02250 at 480.307 kb on + strand, within AMB_RS02250 at 480.307 kb on + strand, within AMB_RS02250 at 480.308 kb on - strand, within AMB_RS02250 at 480.308 kb on - strand, within AMB_RS02250 at 480.308 kb on - strand, within AMB_RS02250 at 480.308 kb on - strand, within AMB_RS02250 at 480.404 kb on - strand at 480.529 kb on + strand at 480.794 kb on + strand at 480.794 kb on + strand at 480.807 kb on + strand at 480.807 kb on + strand at 480.808 kb on - strand at 480.809 kb on + strand at 480.809 kb on + strand at 480.809 kb on + strand at 480.810 kb on - strand at 480.861 kb on + strand at 480.862 kb on - strand at 481.264 kb on + strand, within AMB_RS02255 at 481.264 kb on + strand, within AMB_RS02255 at 481.264 kb on + strand, within AMB_RS02255 at 481.264 kb on + strand, within AMB_RS02255 at 481.264 kb on + strand, within AMB_RS02255 at 481.265 kb on - strand, within AMB_RS02255 at 481.265 kb on - strand, within AMB_RS02255 at 481.265 kb on - strand, within AMB_RS02255 at 481.495 kb on + strand at 481.552 kb on + strand at 481.553 kb on - strand at 481.553 kb on - strand at 481.740 kb on + strand, within AMB_RS02260 at 481.743 kb on + strand, within AMB_RS02260 at 481.743 kb on + strand, within AMB_RS02260 at 481.743 kb on + strand, within AMB_RS02260 at 481.743 kb on + strand, within AMB_RS02260 at 481.743 kb on + strand, within AMB_RS02260 at 481.744 kb on - strand, within AMB_RS02260 at 481.744 kb on - strand, within AMB_RS02260 at 481.744 kb on - strand, within AMB_RS02260 at 481.744 kb on - strand, within AMB_RS02260 at 481.745 kb on + strand, within AMB_RS02260 at 481.745 kb on + strand, within AMB_RS02260 at 481.745 kb on + strand, within AMB_RS02260 at 481.944 kb on + strand, within AMB_RS02260 at 481.944 kb on + strand, within AMB_RS02260 at 481.944 kb on + strand, within AMB_RS02260 at 481.944 kb on + strand, within AMB_RS02260 at 481.945 kb on - strand, within AMB_RS02260 at 481.991 kb on + strand, within AMB_RS02260 at 481.992 kb on - strand, within AMB_RS02260 at 481.998 kb on + strand, within AMB_RS02260 at 481.998 kb on + strand, within AMB_RS02260 at 481.999 kb on - strand, within AMB_RS02260 at 481.999 kb on - strand, within AMB_RS02260 at 481.999 kb on - strand, within AMB_RS02260 at 481.999 kb on - strand, within AMB_RS02260 at 482.035 kb on - strand, within AMB_RS02260 at 482.035 kb on - strand, within AMB_RS02260 at 482.092 kb on - strand, within AMB_RS02260 at 482.117 kb on + strand, within AMB_RS02260 at 482.147 kb on + strand, within AMB_RS02260 at 482.236 kb on - strand, within AMB_RS02260 at 482.281 kb on - strand, within AMB_RS02260 at 482.281 kb on - strand, within AMB_RS02260 at 482.308 kb on - strand, within AMB_RS02260 at 482.394 kb on + strand at 482.395 kb on - strand at 482.395 kb on - strand at 482.395 kb on - strand at 482.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 480,067 + AMB_RS02250 0.84 +0.6 480,307 + AMB_RS02250 0.90 +0.9 480,307 + AMB_RS02250 0.90 +0.6 480,307 + AMB_RS02250 0.90 +1.5 480,307 + AMB_RS02250 0.90 -1.5 480,308 - AMB_RS02250 0.90 +1.6 480,308 - AMB_RS02250 0.90 +0.6 480,308 - AMB_RS02250 0.90 +0.8 480,308 - AMB_RS02250 0.90 -0.2 480,404 - +0.0 480,529 + -2.3 480,794 + +1.6 480,794 + +1.9 480,807 + -1.4 480,807 + -2.5 480,808 - +0.1 480,809 + +1.7 480,809 + +0.0 480,809 + +0.8 480,810 - -0.7 480,861 + +0.2 480,862 - +0.6 481,264 + AMB_RS02255 0.57 +0.2 481,264 + AMB_RS02255 0.57 -1.2 481,264 + AMB_RS02255 0.57 +1.2 481,264 + AMB_RS02255 0.57 -1.5 481,264 + AMB_RS02255 0.57 +1.1 481,265 - AMB_RS02255 0.57 -1.0 481,265 - AMB_RS02255 0.57 -1.2 481,265 - AMB_RS02255 0.57 -0.4 481,495 + +1.6 481,552 + -2.5 481,553 - +1.0 481,553 - -1.5 481,740 + AMB_RS02260 0.18 -0.8 481,743 + AMB_RS02260 0.19 -0.7 481,743 + AMB_RS02260 0.19 -0.0 481,743 + AMB_RS02260 0.19 +0.2 481,743 + AMB_RS02260 0.19 -2.4 481,743 + AMB_RS02260 0.19 -2.0 481,744 - AMB_RS02260 0.19 -0.4 481,744 - AMB_RS02260 0.19 -0.0 481,744 - AMB_RS02260 0.19 -2.4 481,744 - AMB_RS02260 0.19 -1.4 481,745 + AMB_RS02260 0.19 -0.6 481,745 + AMB_RS02260 0.19 -1.2 481,745 + AMB_RS02260 0.19 +0.0 481,944 + AMB_RS02260 0.43 -1.4 481,944 + AMB_RS02260 0.43 -0.1 481,944 + AMB_RS02260 0.43 -0.4 481,944 + AMB_RS02260 0.43 +0.2 481,945 - AMB_RS02260 0.44 +1.6 481,991 + AMB_RS02260 0.49 -0.2 481,992 - AMB_RS02260 0.49 -0.4 481,998 + AMB_RS02260 0.50 -1.2 481,998 + AMB_RS02260 0.50 +0.0 481,999 - AMB_RS02260 0.50 +0.0 481,999 - AMB_RS02260 0.50 -0.4 481,999 - AMB_RS02260 0.50 -2.1 481,999 - AMB_RS02260 0.50 -2.7 482,035 - AMB_RS02260 0.55 +1.6 482,035 - AMB_RS02260 0.55 -1.7 482,092 - AMB_RS02260 0.62 +0.5 482,117 + AMB_RS02260 0.65 -0.4 482,147 + AMB_RS02260 0.68 -0.1 482,236 - AMB_RS02260 0.79 -0.0 482,281 - AMB_RS02260 0.85 +1.7 482,281 - AMB_RS02260 0.85 +0.7 482,308 - AMB_RS02260 0.88 -2.0 482,394 + -0.3 482,395 - -1.0 482,395 - -0.7 482,395 - -0.3 482,486 - +0.5
Or see this region's nucleotide sequence