Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02155 and AMB_RS02160 are separated by 181 nucleotides AMB_RS02160 and AMB_RS02165 are separated by 148 nucleotides AMB_RS02165 and AMB_RS02170 are separated by 221 nucleotides AMB_RS02170 and AMB_RS02175 are separated by 236 nucleotides
AMB_RS02155: AMB_RS02155 - hypothetical protein, at 454,159 to 454,458
_RS02155
AMB_RS02160: AMB_RS02160 - tRNA-Ser, at 454,640 to 454,732
_RS02160
AMB_RS02165: AMB_RS02165 - hypothetical protein, at 454,881 to 455,144
_RS02165
AMB_RS02170: AMB_RS02170 - hypothetical protein, at 455,366 to 456,073
_RS02170
AMB_RS02175: AMB_RS02175 - hypothetical protein, at 456,310 to 457,047
_RS02175
Position (kb) 455
456
457 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 454.460 kb on + strand at 454.461 kb on - strand at 454.476 kb on - strand at 454.485 kb on - strand at 454.499 kb on + strand at 454.521 kb on - strand at 454.915 kb on + strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.027 kb on - strand, within AMB_RS02165 at 455.027 kb on - strand, within AMB_RS02165 at 455.125 kb on - strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.278 kb on + strand at 455.279 kb on - strand at 455.279 kb on - strand at 455.279 kb on - strand at 455.279 kb on - strand at 455.314 kb on + strand at 455.315 kb on - strand at 455.315 kb on - strand at 455.367 kb on + strand at 455.368 kb on - strand at 455.368 kb on - strand at 455.385 kb on - strand at 455.391 kb on - strand at 455.484 kb on + strand, within AMB_RS02170 at 455.484 kb on + strand, within AMB_RS02170 at 455.484 kb on + strand, within AMB_RS02170 at 455.484 kb on + strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.485 kb on - strand, within AMB_RS02170 at 455.493 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.604 kb on + strand, within AMB_RS02170 at 455.745 kb on + strand, within AMB_RS02170 at 455.746 kb on - strand, within AMB_RS02170 at 455.746 kb on - strand, within AMB_RS02170 at 455.875 kb on - strand, within AMB_RS02170 at 455.875 kb on - strand, within AMB_RS02170 at 456.099 kb on + strand at 456.126 kb on + strand at 456.187 kb on + strand at 456.187 kb on + strand at 456.187 kb on + strand at 456.188 kb on - strand at 456.198 kb on - strand at 456.198 kb on - strand at 456.210 kb on + strand at 456.211 kb on - strand at 456.211 kb on - strand at 456.211 kb on - strand at 456.311 kb on + strand at 456.311 kb on + strand at 456.311 kb on + strand at 456.312 kb on - strand at 456.312 kb on - strand at 456.312 kb on - strand at 456.313 kb on + strand at 456.313 kb on + strand at 456.313 kb on + strand at 456.314 kb on - strand at 456.314 kb on - strand at 456.314 kb on - strand at 456.411 kb on + strand, within AMB_RS02175 at 456.411 kb on + strand, within AMB_RS02175 at 456.417 kb on - strand, within AMB_RS02175 at 456.417 kb on - strand, within AMB_RS02175 at 456.417 kb on - strand, within AMB_RS02175 at 456.443 kb on + strand, within AMB_RS02175 at 456.443 kb on + strand, within AMB_RS02175 at 456.444 kb on - strand, within AMB_RS02175 at 456.548 kb on + strand, within AMB_RS02175 at 456.548 kb on + strand, within AMB_RS02175 at 456.566 kb on + strand, within AMB_RS02175 at 456.566 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.600 kb on - strand, within AMB_RS02175 at 456.744 kb on + strand, within AMB_RS02175 at 456.745 kb on - strand, within AMB_RS02175 at 456.816 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.837 kb on - strand, within AMB_RS02175 at 456.855 kb on + strand, within AMB_RS02175 at 456.855 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 454,460 + -0.5 454,461 - +0.6 454,476 - +1.6 454,485 - -0.8 454,499 + -1.4 454,521 - -0.1 454,915 + AMB_RS02165 0.13 -0.1 454,916 - AMB_RS02165 0.13 -1.4 454,916 - AMB_RS02165 0.13 -3.8 454,916 - AMB_RS02165 0.13 +0.0 454,916 - AMB_RS02165 0.13 -1.4 455,026 + AMB_RS02165 0.55 +1.6 455,026 + AMB_RS02165 0.55 -1.4 455,026 + AMB_RS02165 0.55 -2.3 455,026 + AMB_RS02165 0.55 -0.7 455,026 + AMB_RS02165 0.55 -2.6 455,027 - AMB_RS02165 0.55 -0.2 455,027 - AMB_RS02165 0.55 -2.5 455,125 - -0.7 455,278 + +1.2 455,278 + -0.7 455,278 + -2.1 455,278 + +0.4 455,278 + -2.4 455,278 + -0.1 455,278 + +2.3 455,279 - +0.6 455,279 - -0.4 455,279 - -0.7 455,279 - +0.2 455,314 + -0.7 455,315 - +0.6 455,315 - +0.1 455,367 + +0.5 455,368 - +0.6 455,368 - -1.8 455,385 - -0.7 455,391 - -0.3 455,484 + AMB_RS02170 0.17 -2.0 455,484 + AMB_RS02170 0.17 -3.1 455,484 + AMB_RS02170 0.17 -0.3 455,484 + AMB_RS02170 0.17 -0.7 455,485 - AMB_RS02170 0.17 +0.0 455,485 - AMB_RS02170 0.17 -0.2 455,485 - AMB_RS02170 0.17 +0.0 455,485 - AMB_RS02170 0.17 -0.2 455,493 + AMB_RS02170 0.18 +0.6 455,604 + AMB_RS02170 0.34 +0.7 455,604 + AMB_RS02170 0.34 -2.2 455,604 + AMB_RS02170 0.34 -0.6 455,604 + AMB_RS02170 0.34 -0.5 455,745 + AMB_RS02170 0.54 -2.7 455,746 - AMB_RS02170 0.54 -1.4 455,746 - AMB_RS02170 0.54 -0.4 455,875 - AMB_RS02170 0.72 -2.2 455,875 - AMB_RS02170 0.72 +0.0 456,099 + -0.1 456,126 + -0.1 456,187 + +1.6 456,187 + -0.1 456,187 + -0.6 456,188 - -0.4 456,198 - -0.9 456,198 - +0.6 456,210 + -0.3 456,211 - -1.0 456,211 - -0.5 456,211 - +0.6 456,311 + -2.5 456,311 + -3.4 456,311 + -0.2 456,312 - +3.8 456,312 - -0.1 456,312 - +1.6 456,313 + +0.5 456,313 + -1.2 456,313 + -0.8 456,314 - +0.8 456,314 - -0.4 456,314 - -0.4 456,411 + AMB_RS02175 0.14 -0.1 456,411 + AMB_RS02175 0.14 -0.7 456,417 - AMB_RS02175 0.14 -1.5 456,417 - AMB_RS02175 0.14 -0.2 456,417 - AMB_RS02175 0.14 -1.0 456,443 + AMB_RS02175 0.18 -1.0 456,443 + AMB_RS02175 0.18 -1.5 456,444 - AMB_RS02175 0.18 -1.5 456,548 + AMB_RS02175 0.32 -0.3 456,548 + AMB_RS02175 0.32 -1.2 456,566 + AMB_RS02175 0.35 +1.6 456,566 + AMB_RS02175 0.35 -0.4 456,599 + AMB_RS02175 0.39 -0.4 456,599 + AMB_RS02175 0.39 -2.1 456,599 + AMB_RS02175 0.39 -0.1 456,599 + AMB_RS02175 0.39 -0.2 456,599 + AMB_RS02175 0.39 +0.6 456,600 - AMB_RS02175 0.39 -1.5 456,744 + AMB_RS02175 0.59 -1.0 456,745 - AMB_RS02175 0.59 -2.2 456,816 + AMB_RS02175 0.69 +1.4 456,836 + AMB_RS02175 0.71 +0.4 456,836 + AMB_RS02175 0.71 +0.2 456,836 + AMB_RS02175 0.71 +0.6 456,836 + AMB_RS02175 0.71 -0.3 456,837 - AMB_RS02175 0.71 -0.4 456,855 + AMB_RS02175 0.74 -0.1 456,855 + AMB_RS02175 0.74 +0.0 456,905 + AMB_RS02175 0.81 +0.1 456,905 + AMB_RS02175 0.81 -0.7 456,905 + AMB_RS02175 0.81 +0.1 456,905 + AMB_RS02175 0.81 -0.7 456,905 + AMB_RS02175 0.81 +0.0 456,905 + AMB_RS02175 0.81 -1.4 456,905 + AMB_RS02175 0.81 -1.8 456,905 + AMB_RS02175 0.81 -1.7 456,906 - AMB_RS02175 0.81 +0.2 456,906 - AMB_RS02175 0.81 -0.4 456,906 - AMB_RS02175 0.81 +0.2 456,906 - AMB_RS02175 0.81 +0.7 456,906 - AMB_RS02175 0.81 +1.0 456,906 - AMB_RS02175 0.81 -0.3 456,906 - AMB_RS02175 0.81 -0.3 456,906 - AMB_RS02175 0.81 -3.1 456,906 - AMB_RS02175 0.81 -1.4 456,906 - AMB_RS02175 0.81 -1.0 456,906 - AMB_RS02175 0.81 +0.9
Or see this region's nucleotide sequence