Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23855 and AMB_RS02110 are separated by 262 nucleotides AMB_RS02110 and AMB_RS23860 are separated by 395 nucleotides AMB_RS23860 and AMB_RS02120 are separated by 182 nucleotides
AMB_RS23855: AMB_RS23855 - PDZ domain-containing protein, at 440,944 to 443,247
_RS23855
AMB_RS02110: AMB_RS02110 - IS701 family transposase ISMmg4, at 443,510 to 444,817
_RS02110
AMB_RS23860: AMB_RS23860 - IS256 family transposase, at 445,213 to 445,566
_RS23860
AMB_RS02120: AMB_RS02120 - hypothetical protein, at 445,749 to 446,084
_RS02120
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.627 kb on + strand, within AMB_RS23855 at 442.627 kb on + strand, within AMB_RS23855 at 442.628 kb on - strand, within AMB_RS23855 at 442.628 kb on - strand, within AMB_RS23855 at 442.646 kb on - strand, within AMB_RS23855 at 442.757 kb on - strand, within AMB_RS23855 at 442.858 kb on - strand, within AMB_RS23855 at 442.858 kb on - strand, within AMB_RS23855 at 442.879 kb on + strand, within AMB_RS23855 at 442.879 kb on + strand, within AMB_RS23855 at 442.879 kb on + strand, within AMB_RS23855 at 442.880 kb on - strand, within AMB_RS23855 at 442.880 kb on - strand, within AMB_RS23855 at 442.998 kb on + strand, within AMB_RS23855 at 442.999 kb on - strand, within AMB_RS23855 at 442.999 kb on - strand, within AMB_RS23855 at 443.004 kb on + strand, within AMB_RS23855 at 443.004 kb on + strand, within AMB_RS23855 at 443.004 kb on + strand, within AMB_RS23855 at 443.005 kb on - strand, within AMB_RS23855 at 443.017 kb on - strand at 443.020 kb on + strand at 443.020 kb on + strand at 443.021 kb on - strand at 443.058 kb on + strand at 443.058 kb on + strand at 443.058 kb on + strand at 443.062 kb on + strand at 443.063 kb on - strand at 443.063 kb on - strand at 443.136 kb on + strand at 443.137 kb on - strand at 443.137 kb on - strand at 443.161 kb on + strand at 443.162 kb on - strand at 443.199 kb on - strand at 443.357 kb on - strand at 443.381 kb on - strand at 443.454 kb on - strand at 443.471 kb on + strand at 443.471 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.559 kb on - strand at 443.559 kb on - strand at 443.559 kb on - strand at 443.618 kb on + strand at 443.618 kb on + strand at 443.618 kb on + strand at 443.619 kb on - strand at 443.619 kb on - strand at 443.619 kb on - strand at 443.872 kb on - strand, within AMB_RS02110 at 443.872 kb on - strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.883 kb on - strand, within AMB_RS02110 at 443.978 kb on + strand, within AMB_RS02110 at 443.978 kb on + strand, within AMB_RS02110 at 443.978 kb on + strand, within AMB_RS02110 at 443.979 kb on - strand, within AMB_RS02110 at 443.979 kb on - strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.219 kb on + strand, within AMB_RS02110 at 444.307 kb on + strand, within AMB_RS02110 at 444.307 kb on + strand, within AMB_RS02110 at 444.308 kb on - strand, within AMB_RS02110 at 444.308 kb on - strand, within AMB_RS02110 at 444.308 kb on - strand, within AMB_RS02110 at 444.308 kb on - strand, within AMB_RS02110 at 444.518 kb on + strand, within AMB_RS02110 at 444.518 kb on + strand, within AMB_RS02110 at 444.519 kb on - strand, within AMB_RS02110 at 444.519 kb on - strand, within AMB_RS02110 at 444.519 kb on - strand, within AMB_RS02110 at 444.519 kb on - strand, within AMB_RS02110 at 444.519 kb on - strand, within AMB_RS02110 at 444.519 kb on - strand, within AMB_RS02110 at 444.546 kb on + strand, within AMB_RS02110 at 444.546 kb on + strand, within AMB_RS02110 at 444.547 kb on - strand, within AMB_RS02110 at 444.638 kb on + strand, within AMB_RS02110 at 444.639 kb on - strand, within AMB_RS02110 at 444.639 kb on - strand, within AMB_RS02110 at 444.639 kb on - strand, within AMB_RS02110 at 444.848 kb on - strand at 444.884 kb on - strand at 444.932 kb on + strand at 444.933 kb on - strand at 444.942 kb on + strand at 444.942 kb on + strand at 444.942 kb on + strand at 444.942 kb on + strand at 444.943 kb on - strand at 444.943 kb on - strand at 444.943 kb on - strand at 444.943 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 444.949 kb on - strand at 445.039 kb on - strand at 445.044 kb on + strand at 445.044 kb on + strand at 445.045 kb on - strand at 445.074 kb on - strand at 445.090 kb on - strand at 445.090 kb on - strand at 445.209 kb on + strand at 445.210 kb on - strand at 445.282 kb on - strand, within AMB_RS23860 at 445.282 kb on - strand, within AMB_RS23860 at 445.282 kb on - strand, within AMB_RS23860 at 445.282 kb on - strand, within AMB_RS23860 at 445.512 kb on + strand, within AMB_RS23860 at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.565 kb on - strand at 445.565 kb on - strand at 445.565 kb on - strand at 445.617 kb on + strand at 445.617 kb on + strand at 445.618 kb on - strand at 445.618 kb on - strand at 445.618 kb on - strand at 445.684 kb on - strand at 445.689 kb on + strand at 445.692 kb on + strand at 445.692 kb on + strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.795 kb on - strand, within AMB_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 442,623 + AMB_RS23855 0.73 +1.6 442,623 + AMB_RS23855 0.73 -1.0 442,623 + AMB_RS23855 0.73 +0.0 442,623 + AMB_RS23855 0.73 +0.0 442,623 + AMB_RS23855 0.73 -1.0 442,623 + AMB_RS23855 0.73 -1.0 442,623 + AMB_RS23855 0.73 -1.7 442,623 + AMB_RS23855 0.73 -0.6 442,623 + AMB_RS23855 0.73 -1.2 442,624 - AMB_RS23855 0.73 -0.4 442,624 - AMB_RS23855 0.73 -0.7 442,624 - AMB_RS23855 0.73 -1.0 442,624 - AMB_RS23855 0.73 -1.2 442,624 - AMB_RS23855 0.73 +0.1 442,624 - AMB_RS23855 0.73 +0.0 442,624 - AMB_RS23855 0.73 -0.4 442,624 - AMB_RS23855 0.73 -0.5 442,624 - AMB_RS23855 0.73 +0.4 442,624 - AMB_RS23855 0.73 +0.6 442,624 - AMB_RS23855 0.73 -1.7 442,624 - AMB_RS23855 0.73 -1.8 442,624 - AMB_RS23855 0.73 -1.8 442,627 + AMB_RS23855 0.73 +0.0 442,627 + AMB_RS23855 0.73 -0.2 442,628 - AMB_RS23855 0.73 +0.6 442,628 - AMB_RS23855 0.73 +0.0 442,646 - AMB_RS23855 0.74 -1.8 442,757 - AMB_RS23855 0.79 -0.3 442,858 - AMB_RS23855 0.83 +0.5 442,858 - AMB_RS23855 0.83 +1.7 442,879 + AMB_RS23855 0.84 -1.0 442,879 + AMB_RS23855 0.84 -0.3 442,879 + AMB_RS23855 0.84 +0.6 442,880 - AMB_RS23855 0.84 +1.6 442,880 - AMB_RS23855 0.84 +0.5 442,998 + AMB_RS23855 0.89 -0.4 442,999 - AMB_RS23855 0.89 -1.2 442,999 - AMB_RS23855 0.89 -0.4 443,004 + AMB_RS23855 0.89 -1.5 443,004 + AMB_RS23855 0.89 -1.6 443,004 + AMB_RS23855 0.89 -0.2 443,005 - AMB_RS23855 0.89 -0.0 443,017 - -1.2 443,020 + -1.9 443,020 + -1.2 443,021 - -0.3 443,058 + -0.7 443,058 + +0.7 443,058 + -1.0 443,062 + +0.0 443,063 - -0.7 443,063 - -1.3 443,136 + -2.7 443,137 - -0.7 443,137 - -0.4 443,161 + -1.0 443,162 - -1.4 443,199 - -0.3 443,357 - -0.4 443,381 - +0.6 443,454 - -1.5 443,471 + -1.7 443,471 + +0.6 443,558 + -1.5 443,558 + +0.1 443,558 + -1.0 443,558 + -1.2 443,558 + -0.1 443,559 - +0.2 443,559 - +0.0 443,559 - -0.4 443,618 + -0.4 443,618 + -0.2 443,618 + -3.2 443,619 - +0.5 443,619 - +0.0 443,619 - +0.2 443,872 - AMB_RS02110 0.28 +0.6 443,872 - AMB_RS02110 0.28 +0.0 443,882 + AMB_RS02110 0.28 +0.2 443,882 + AMB_RS02110 0.28 -0.9 443,882 + AMB_RS02110 0.28 +0.8 443,882 + AMB_RS02110 0.28 -2.0 443,883 - AMB_RS02110 0.29 -2.3 443,978 + AMB_RS02110 0.36 -0.4 443,978 + AMB_RS02110 0.36 -1.0 443,978 + AMB_RS02110 0.36 +1.0 443,979 - AMB_RS02110 0.36 +0.9 443,979 - AMB_RS02110 0.36 -1.2 444,188 + AMB_RS02110 0.52 -1.0 444,188 + AMB_RS02110 0.52 +0.6 444,188 + AMB_RS02110 0.52 -2.0 444,188 + AMB_RS02110 0.52 -1.8 444,189 - AMB_RS02110 0.52 -1.0 444,189 - AMB_RS02110 0.52 +0.2 444,189 - AMB_RS02110 0.52 +2.0 444,189 - AMB_RS02110 0.52 -0.2 444,219 + AMB_RS02110 0.54 +0.1 444,307 + AMB_RS02110 0.61 +1.6 444,307 + AMB_RS02110 0.61 +0.0 444,308 - AMB_RS02110 0.61 -3.0 444,308 - AMB_RS02110 0.61 -0.1 444,308 - AMB_RS02110 0.61 +1.6 444,308 - AMB_RS02110 0.61 -0.7 444,518 + AMB_RS02110 0.77 -1.0 444,518 + AMB_RS02110 0.77 -1.0 444,519 - AMB_RS02110 0.77 +0.6 444,519 - AMB_RS02110 0.77 +1.0 444,519 - AMB_RS02110 0.77 +0.3 444,519 - AMB_RS02110 0.77 +0.6 444,519 - AMB_RS02110 0.77 +0.0 444,519 - AMB_RS02110 0.77 +0.2 444,546 + AMB_RS02110 0.79 -0.4 444,546 + AMB_RS02110 0.79 +1.6 444,547 - AMB_RS02110 0.79 +0.0 444,638 + AMB_RS02110 0.86 -2.1 444,639 - AMB_RS02110 0.86 -0.2 444,639 - AMB_RS02110 0.86 -0.7 444,639 - AMB_RS02110 0.86 -3.0 444,848 - +3.6 444,884 - -2.8 444,932 + -0.0 444,933 - -1.5 444,942 + -0.4 444,942 + -1.0 444,942 + -0.0 444,942 + +0.3 444,943 - -1.8 444,943 - +0.6 444,943 - -0.4 444,943 - -1.4 444,949 - -2.5 444,949 - -0.5 444,949 - +0.6 444,949 - +0.2 444,949 - -0.3 445,039 - +0.3 445,044 + -1.0 445,044 + -1.4 445,045 - +0.4 445,074 - +0.0 445,090 - +4.3 445,090 - -0.4 445,209 + -1.5 445,210 - +0.5 445,282 - AMB_RS23860 0.19 -0.7 445,282 - AMB_RS23860 0.19 +0.1 445,282 - AMB_RS23860 0.19 -2.1 445,282 - AMB_RS23860 0.19 +0.7 445,512 + AMB_RS23860 0.84 -1.0 445,564 + -0.3 445,564 + -2.5 445,564 + -2.6 445,564 + -1.5 445,564 + -1.8 445,565 - +0.0 445,565 - -1.4 445,565 - +0.7 445,617 + +1.6 445,617 + -0.7 445,618 - -1.0 445,618 - -2.8 445,618 - -0.4 445,684 - -2.2 445,689 + -1.0 445,692 + -1.2 445,692 + +0.9 445,693 - +1.6 445,693 - -0.7 445,693 - -2.2 445,693 - +0.2 445,693 - -0.4 445,693 - +0.9 445,693 - -1.0 445,693 - -1.7 445,795 - AMB_RS02120 0.14 -0.3
Or see this region's nucleotide sequence